PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC1BG022160.3
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 317aa    MW: 35944.1 Da    PI: 9.8523
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC1BG022160.3genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF977.7e-3193143151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                       krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs +g+lyeys+
  TRIDC1BG022160.3  93 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSGRGRLYEYSN 143
                       79***********************************************95 PP
2K-box103.33.2e-341602573100
             K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                       +ss   ++e +a+++qqe+akLk++i +Lq+++R l+G+ + ++s+++L+qLe +L+k+l kiR++Knell+++ie++q++e elq++n  Lr
  TRIDC1BG022160.3 160 TSSAGTVAEINAQHYQQESAKLKQQITTLQNSNRTLIGDTMATMSHRDLKQLEGRLDKGLGKIRARKNELLCAEIEYMQRREMELQNNNFFLR 252
                       4455559999*********************************************************************************** PP

             K-box  96 kklee 100
                       +k++e
  TRIDC1BG022160.3 253 EKVAE 257
                       **986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MATTGWGNSR YARRGGDSAR GSGAYSLRKP QRERHHQGEE MDHSLSFSSY LQRRVQEVAA  60
QENPVKESAS PGSGSGSPGG AAEKMGRGRI EIKRIENTTN RQVTFCKRRN GLLKKAYELS  120
VLCDAEVALI VFSGRGRLYE YSNNSVKATI ERYKKATSDT SSAGTVAEIN AQHYQQESAK  180
LKQQITTLQN SNRTLIGDTM ATMSHRDLKQ LEGRLDKGLG KIRARKNELL CAEIEYMQRR  240
EMELQNNNFF LREKVAETER GQQQTLNMMG AASTSDEYEQ NMIHCDPRTF LQFNFMQQQP  300
QYYSQQEDRK SLNSVGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-95MIKC_MADS family protein