PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC1BG022160.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 303aa    MW: 34365.4 Da    PI: 9.5536
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC1BG022160.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.17.2e-3178128151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                       krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs +g+lyeys+
  TRIDC1BG022160.1  78 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSGRGRLYEYSN 128
                       79***********************************************95 PP
2K-box103.42.9e-341462433100
             K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                       +ss   ++e +a+++qqe+akLk++i +Lq+++R l+G+ + ++s+++L+qLe +L+k+l kiR++Knell+++ie++q++e elq++n  Lr
  TRIDC1BG022160.1 146 TSSAGTVAEINAQHYQQESAKLKQQITTLQNSNRTLIGDTMATMSHRDLKQLEGRLDKGLGKIRARKNELLCAEIEYMQRREMELQNNNFFLR 238
                       4455559999*********************************************************************************** PP

             K-box  96 kklee 100
                       +k++e
  TRIDC1BG022160.1 239 EKVAE 243
                       **986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
GDSARGSGAY SLRKPQRERH HQGEEMDHSL SFSSYLQRRV QEVAAQENPV KESASPGSGS  60
GSPGGAAEKM GRGRIEIKRI ENTTNRQVTF CKRRNGLLKK AYELSVLCDA EVALIVFSGR  120
GRLYEYSNNS SVKATIERYK KATSDTSSAG TVAEINAQHY QQESAKLKQQ ITTLQNSNRT  180
LIGDTMATMS HRDLKQLEGR LDKGLGKIRA RKNELLCAEI EYMQRREMEL QNNNFFLREK  240
VAETERGQQQ TLNMMGAAST SDEYEQNMIH CDPRTFLQFN FMQQQPQYYS QQEDRKSLNS  300
VGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.16e-94MIKC_MADS family protein