PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG017860.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 459aa MW: 50488.6 Da PI: 8.1615

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG017860.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.2	2.9e-16	130	174	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+WT eEd ll v+++G g+W+++a +++ gR++kqc++rw + TRIDC1BG017860.1 130 KGSWTVEEDTLLRAKVQEFGIGRWTKVAMYLP-GRSGKQCRERWVN 174 799***************************.*********88 PP
2	Myb_DNA-binding	40.7	5.6e-13	182	224	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r+ WT Ed +l+++++ +G++ W+ Iar + gR ++ +k++++ TRIDC1BG017860.1 182 RKIWTDSEDMKLIELHQTWGNR-WSVIARLLS-GRPENAVKNHYH 224 567*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
RLLPFFLVCL PHLYRKCSCS HCFDPTSEAA LMAEGSAYFD WDVAASAAGN QYTSSGHGGV 60 SQHFVHNDGS APARVVVFPG ARSRASGGIN MMDPTRFSSY GISDAPTAIV APARVPPRAR 120 SKGQRLTQFK GSWTVEEDTL LRAKVQEFGI GRWTKVAMYL PGRSGKQCRE RWVNQLDPNI 180 ERKIWTDSED MKLIELHQTW GNRWSVIARL LSGRPENAVK NHYHATKRSL NAKRQLKKRN 240 NKQPPPGQLS LLAEYIHSLE PHTGSPMETP PVSPLLYHDQ EHGGQMGMAG RDVAVVITPT 300 TQAHPTYPNS AMTGMYYHPN PANMQYWAPD LNVADRQNEG YSYYIPPSAH LNHHLCYGLS 360 PTQMVSEQDM QQAAKASMNM SAFTGQHTLP ASNLKAVAEM HRESSSNNQL GNVSGGASDW 420 SYYYGMDEVG PSGPAGGTGS GSNPDDIDVV QMAPREFSA

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

RLLPFFLVCL PHLYRKCSCS HCFDPTSEAA LMAEGSAYFD WDVAASAAGN QYTSSGHGGV  60
SQHFVHNDGS APARVVVFPG ARSRASGGIN MMDPTRFSSY GISDAPTAIV APARVPPRAR  120
SKGQRLTQFK GSWTVEEDTL LRAKVQEFGI GRWTKVAMYL PGRSGKQCRE RWVNQLDPNI  180
ERKIWTDSED MKLIELHQTW GNRWSVIARL LSGRPENAVK NHYHATKRSL NAKRQLKKRN  240
NKQPPPGQLS LLAEYIHSLE PHTGSPMETP PVSPLLYHDQ EHGGQMGMAG RDVAVVITPT  300
TQAHPTYPNS AMTGMYYHPN PANMQYWAPD LNVADRQNEG YSYYIPPSAH LNHHLCYGLS  360
PTQMVSEQDM QQAAKASMNM SAFTGQHTLP ASNLKAVAEM HRESSSNNQL GNVSGGASDW  420
SYYYGMDEVG PSGPAGGTGS GSNPDDIDVV QMAPREFSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	2e-36	MYB family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG017860.1