PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC1AG054720.4
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family RAV
Protein Properties Length: 392aa    MW: 42007.3 Da    PI: 10.0415
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC1AG054720.4genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.43.4e-1365113155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+ykGV   + +grW A+I++      r +r++lg+f  + eAa+a++aa+++++g
  TRIDC1AG054720.4  65 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEAEAARAYDAAAQRFRG 113
                       89****9888.8*********......44**********99*************98 PP
2B3941.1e-29201303192
                       EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                       f+k+ tpsdv+k++rlv+pk++ae+h            +g + +++ l + d+ g++W+++++y+++s++yvltkGW++Fvk++gL +gD v 
  TRIDC1AG054720.4 201 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsagaavSG-ECKGMLLNFDDSAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVG 292
                       89***************************88888777532.34899*********************************************** PP

                       EEE-SSSEE.. CS
                B3  82 Fkldgrsefel 92 
                       F+++ + + +l
  TRIDC1AG054720.4 293 FYRSASGSNQL 303
                       **776554444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    
MDSARSCLVD DVSSGASTGK KASPSPAAPA TKPLQRVGSG ASAVMDAPEP GAEADSGRVG  60
RLPSSKYKGV VPQPNGRWGA QIYERHQRVW LGTFTGEAEA ARAYDAAAQR FRGRDAVTNF  120
RPLTESDPED AAELRFLAAR SKAEVVDMLR KHTYPDELAQ YKRAYFAAAA ASSPTSSSVP  180
PASSPSSAAS PSPAARREHL FDKTVTPSDV GKLNRLVIPK QHAEKHFPLQ LPSAGAAVSG  240
ECKGMLLNFD DSAGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKGLHAGDA VGFYRSASGS  300
NQLFIDCKLR SKTTTMTTTF VNAAAAPSPA PVMRTVRLFG VDLLTAPAPS HAPEHEDCSM  360
VPKTSKRSMD ASAAATPAHA VWKKRCIDFA LT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-101RAV family protein