PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC1AG054720.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | RAV | ||||||||
Protein Properties | Length: 312aa MW: 33724.9 Da PI: 10.1295 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.9 | 2.5e-13 | 65 | 113 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ r +r++lg+f + eAa+a++aa+++++g TRIDC1AG054720.3 65 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEAEAARAYDAAAQRFRG 113 89****9888.8*********......44**********99*************98 PP | |||||||
2 | B3 | 94.6 | 6.8e-30 | 180 | 282 | 1 | 92 |
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+ tpsdv+k++rlv+pk++ae+h +g + +++ l + d+ g++W+++++y+++s++yvltkGW++Fvk++gL +gD v TRIDC1AG054720.3 180 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsagaavSG-ECKGMLLNFDDSAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVG 271 89***************************88888777532.34899*********************************************** PP EEE-SSSEE.. CS B3 82 Fkldgrsefel 92 F+++ + + +l TRIDC1AG054720.3 272 FYRSASGSNQL 282 **876554444 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence |
MDSARSCLVD DVSSGASTGK KASPSPAAPA TKPLQRVGSG ASAVMDAPEP GAEADSGRVG 60 RLPSSKYKGV VPQPNGRWGA QIYERHQRVW LGTFTGEAEA ARAYDAAAQR FRGRDAVTNF 120 RPLTESDPED AAELRFLAAR SKAEVVDMLR KHTYPDELAQ YKRPSSAASP SPAARREHLF 180 DKTVTPSDVG KLNRLVIPKQ HAEKHFPLQL PSAGAAVSGE CKGMLLNFDD SAGKVWRFRY 240 SYWNSSQSYV LTKGWSRFVK EKGLHAGDAV GFYRSASGSN QLFIDCKLRS KTTTMTTTFV 300 NAAAAPSPAP VM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 1e-100 | RAV family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC1AG054720.3 |