PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1AG052670.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

AP2

Protein Properties

Length: 346aa MW: 38105.4 Da PI: 10.1504

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG052670.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37.6	5.7e-12	83	134	9	55
AP2 9 dkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g TRIDC1AG052670.3 83 HRWTGRYEAHLWDkNSWNPtqrKKgKQVYLGAYDEEEAAARAYDLAALKYWG 134 899********888855666447***********************98 PP
2	AP2	55.7	1.3e-17	177	228	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++++grW+A+I + g +k+ +lg++gt eeAa+a++ a+ +++g TRIDC1AG052670.3 177 SKYRGVARHHQNGRWEARIGRvF---G-NKYLYLGTYGTQEEAARAYDIAAIEYKG 228 89**************99966...3.6*********************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MDSILMVKSE IESYAGQPAV LGGGGGGEVV VRRRRREPTL GPVGGGIGKA SLPGVAVKRS 60 SRFRGVSRSV CVLIFKDQLR CLHRWTGRYE AHLWDKNSWN PTQRKKGKQV YLGAYDEEEA 120 AARAYDLAAL KYWGATTYTN FPVMDYDKEL KIMETLTKEE YLASLRRKSS GFSRGVSKYR 180 GVARHHQNGR WEARIGRVFG NKYLYLGTYG TQEEAARAYD IAAIEYKGVN AVTNFDLRSY 240 ITWLKPPVAG PAALADQLLA GMHTQLPPSP VEHERFLPAE AHIMLPPTTA AAAPGSPFIL 300 DHSAAALGGG LRRRSSSSSS STALSLLLKS TMFKQLVERN DPDSPQ

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MDSILMVKSE IESYAGQPAV LGGGGGGEVV VRRRRREPTL GPVGGGIGKA SLPGVAVKRS  60
SRFRGVSRSV CVLIFKDQLR CLHRWTGRYE AHLWDKNSWN PTQRKKGKQV YLGAYDEEEA  120
AARAYDLAAL KYWGATTYTN FPVMDYDKEL KIMETLTKEE YLASLRRKSS GFSRGVSKYR  180
GVARHHQNGR WEARIGRVFG NKYLYLGTYG TQEEAARAYD IAAIEYKGVN AVTNFDLRSY  240
ITWLKPPVAG PAALADQLLA GMHTQLPPSP VEHERFLPAE AHIMLPPTTA AAAPGSPFIL  300
DHSAAALGGG LRRRSSSSSS STALSLLLKS TMFKQLVERN DPDSPQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	101	109	PTQRKKGKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	7e-75	AP2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG052670.3