PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1AG052670.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

AP2

Protein Properties

Length: 407aa MW: 43955.4 Da PI: 9.4776

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG052670.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.1	7.1e-16	56	115	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g TRIDC1AG052670.1 56 SRFRGVSRHRWTGRYEAHLWDkNSWNPtqrKKgKQVYLGAYDEEEAAARAYDLAALKYWG 115 789****************888855666447***********************98 PP
2	AP2	55.3	1.6e-17	158	209	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++++grW+A+I + g +k+ +lg++gt eeAa+a++ a+ +++g TRIDC1AG052670.1 158 SKYRGVARHHQNGRWEARIGRvF---G-NKYLYLGTYGTQEEAARAYDIAAIEYKG 209 89**************99966...3.6*********************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MVKSEIESYA GQPAVLGGGG GGEVVVRRRR REPTLGPVGG GIGKASLPGV AVKRSSRFRG 60 VSRHRWTGRY EAHLWDKNSW NPTQRKKGKQ VYLGAYDEEE AAARAYDLAA LKYWGATTYT 120 NFPVMDYDKE LKIMETLTKE EYLASLRRKS SGFSRGVSKY RGVARHHQNG RWEARIGRVF 180 GNKYLYLGTY GTQEEAARAY DIAAIEYKGV NAVTNFDLRS YITWLKPPVA GPAALADQLL 240 AGMHTQLPPS PVEHERFLPA EAHIMLPPTT AAAAPGSPFI LDHSAAALGG GLRRRSSSSS 300 SSTALSLLLK STMFKQLVER NDPDSPQGTG GCADRVGELP AGEGSYEYRD FFHGVSSDVC 360 GLFSSPSNAC GNNAGFQGAA VASCYGSGER MAPTTTPWDG FGDIAAL

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MVKSEIESYA GQPAVLGGGG GGEVVVRRRR REPTLGPVGG GIGKASLPGV AVKRSSRFRG  60
VSRHRWTGRY EAHLWDKNSW NPTQRKKGKQ VYLGAYDEEE AAARAYDLAA LKYWGATTYT  120
NFPVMDYDKE LKIMETLTKE EYLASLRRKS SGFSRGVSKY RGVARHHQNG RWEARIGRVF  180
GNKYLYLGTY GTQEEAARAY DIAAIEYKGV NAVTNFDLRS YITWLKPPVA GPAALADQLL  240
AGMHTQLPPS PVEHERFLPA EAHIMLPPTT AAAAPGSPFI LDHSAAALGG GLRRRSSSSS  300
SSTALSLLLK STMFKQLVER NDPDSPQGTG GCADRVGELP AGEGSYEYRD FFHGVSSDVC  360
GLFSSPSNAC GNNAGFQGAA VASCYGSGER MAPTTTPWDG FGDIAAL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	90	PTQRKKGKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	1e-78	AP2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG052670.1