PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC1AG046230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 139aa MW: 15829.5 Da PI: 11.5386 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.8 | 3.2e-19 | 10 | 57 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 rienk r + fskRr+g++ KA+EL v+C+a+va +++s gk y + TRIDC1AG046230.1 10 RIENKAARDICFSKRRQGLFHKANELAVMCGAQVAAVVYSRAGKAYSF 57 8*******************************************9988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence |
MGRKKIVIRR IENKAARDIC FSKRRQGLFH KANELAVMCG AQVAAVVYSR AGKAYSFGHP 60 SAECWRHLSL QRRSFFYLEL PLTTLFSLSH NSLVFSLKNS LMNTHTRTHI PRKRNGFARD 120 TPLVNHNGYM VSLLSPLGL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10140.2 | 3e-19 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC1AG046230.1 |