PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1AG042470.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB_related

Protein Properties

Length: 413aa MW: 45212.7 Da PI: 6.7438

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG042470.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.1	1.3e-10	1	26	18	45
HTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 18 qlGggtWktIartmgkgRtlkqcksrwq 45 ++G++ W+ Ia+ ++ gRt++++k++w+ TRIDC1AG042470.5 1 MHGNK-WAEIAKLLP-GRTDNSIKNHWN 26 59*.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MHGNKWAEIA KLLPGRTDNS IKNHWNSSVR KRLDEYDTGA ARNVPVHVSH NDLKQPAIAL 60 PAENYIDLNE VPNISLRNHS GIVDHSDPTH SPRVCSLKNI KGCSDFLSLS MPTAQPVTSC 120 QASAADDSAV ALAIMGMKMD SGRDKDIELN FVCQKGLQIN LSNEKGLEID PVTAKPDGRE 180 STLVKEAQSF GSLCYQIPKL EDIDLVRSPV LSRHHGSEHG VDGFQSPTGY ATPSPTDGKQ 240 SDQLSVESIL KSAAENFPGT PSILRRRKRD KPTPSQDTDF KIDANSDCFD TPKANCTTYS 300 PHSFKTAPFL SLGRLDDQQL PSVLGKFDVS PTYRLRSKRM AVLKTVEKHL DFSADAMDTC 360 DMVGTLKSSC RNTESINASS DISSAHDRRI NGHMIGLETL TSDFAYTTKL DAT

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MHGNKWAEIA KLLPGRTDNS IKNHWNSSVR KRLDEYDTGA ARNVPVHVSH NDLKQPAIAL  60
PAENYIDLNE VPNISLRNHS GIVDHSDPTH SPRVCSLKNI KGCSDFLSLS MPTAQPVTSC  120
QASAADDSAV ALAIMGMKMD SGRDKDIELN FVCQKGLQIN LSNEKGLEID PVTAKPDGRE  180
STLVKEAQSF GSLCYQIPKL EDIDLVRSPV LSRHHGSEHG VDGFQSPTGY ATPSPTDGKQ  240
SDQLSVESIL KSAAENFPGT PSILRRRKRD KPTPSQDTDF KIDANSDCFD TPKANCTTYS  300
PHSFKTAPFL SLGRLDDQQL PSVLGKFDVS PTYRLRSKRM AVLKTVEKHL DFSADAMDTC  360
DMVGTLKSSC RNTESINASS DISSAHDRRI NGHMIGLETL TSDFAYTTKL DAT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	265	271	RRRKRDK
2	265	272	RRRKRDKP
3	266	272	RRRKRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	4e-14	MYB family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG042470.5