PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1AG042470.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 529aa MW: 59113.6 Da PI: 7.1732

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG042470.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.9	1.7e-11	4	42	9	48
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 de l +av+ + g++Wk++a+ ++ Rt+ qc +rwqk+l TRIDC1AG042470.2 4 DETLRKAVAVFKGKNWKRVAEFFP-DRTEVQCLHRWQKVL 42 89********************.**********986 PP
2	Myb_DNA-binding	55.5	1.3e-17	48	94	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ +++ vk++G+ W+ Iar + gR +kqc++rw+++l TRIDC1AG042470.2 48 KGPWTQEEDDTIIQKVKEHGPTKWSVIARSLH-GRIGKQCRERWHNHL 94 79****************************.***********97 PP
3	Myb_DNA-binding	59.8	5.7e-19	100	142	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT eE++ lvda++++G++ W+ Ia+ ++ gRt++++k++w+ TRIDC1AG042470.2 100 KEAWTFEEEQVLVDAHRMHGNK-WAEIAKLLP-GRTDNSIKNHWN 142 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence
MLQDETLRKA VAVFKGKNWK RVAEFFPDRT EVQCLHRWQK VLDPELIKGP WTQEEDDTII 60 QKVKEHGPTK WSVIARSLHG RIGKQCRERW HNHLDPQIRK EAWTFEEEQV LVDAHRMHGN 120 KWAEIAKLLP GRTDNSIKNH WNSSVRKRLD EYDTGAARNV PVHVSHNDLK QPAIALPAEN 180 YIDLNEVPNI SLRNHSGIVD HSDPTHSPRV CSLKNIKGCS DFLSLSMPTA QPVTSCQASA 240 ADDSAVALAI MGMKMDSGRD KDIELNFVCQ KGLQINLSNE KGLEIDPVTA KPDGRESTLV 300 KEAQSFGSLC YQIPKLEDID LVRSPVLSRH HGSEHGVDGF QSPTGYATPS PTDGKQSDQL 360 SVESILKSAA ENFPGTPSIL RRRKRDKPTP SQDTDFKIDA NSDCFDTPKA NCTTYSPHSF 420 KTAPFLSLGR LDDQQLPSVL GKFDVSPTYR LRSKRMAVLK TVEKHLDFSA DAMDTCDMVG 480 TLKSSCRNTE SINASSDISS AHDRRINGHM IGLETLTSDF AYTTKLDAT

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence

MLQDETLRKA VAVFKGKNWK RVAEFFPDRT EVQCLHRWQK VLDPELIKGP WTQEEDDTII  60
QKVKEHGPTK WSVIARSLHG RIGKQCRERW HNHLDPQIRK EAWTFEEEQV LVDAHRMHGN  120
KWAEIAKLLP GRTDNSIKNH WNSSVRKRLD EYDTGAARNV PVHVSHNDLK QPAIALPAEN  180
YIDLNEVPNI SLRNHSGIVD HSDPTHSPRV CSLKNIKGCS DFLSLSMPTA QPVTSCQASA  240
ADDSAVALAI MGMKMDSGRD KDIELNFVCQ KGLQINLSNE KGLEIDPVTA KPDGRESTLV  300
KEAQSFGSLC YQIPKLEDID LVRSPVLSRH HGSEHGVDGF QSPTGYATPS PTDGKQSDQL  360
SVESILKSAA ENFPGTPSIL RRRKRDKPTP SQDTDFKIDA NSDCFDTPKA NCTTYSPHSF  420
KTAPFLSLGR LDDQQLPSVL GKFDVSPTYR LRSKRMAVLK TVEKHLDFSA DAMDTCDMVG  480
TLKSSCRNTE SINASSDISS AHDRRINGHM IGLETLTSDF AYTTKLDAT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	381	387	RRRKRDK
2	381	388	RRRKRDKP
3	382	388	RRRKRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	5e-84	MYB family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG042470.2