PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1AG042470.13

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB_related

Protein Properties

Length: 443aa MW: 48965.9 Da PI: 6.5555

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG042470.13	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.2	4.5e-19	14	56	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT eE++ lvda++++G++ W+ Ia+ ++ gRt++++k++w+ TRIDC1AG042470.13 14 KEAWTFEEEQVLVDAHRMHGNK-WAEIAKLLP-GRTDNSIKNHWN 56 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
WISWHNHLDP QIRKEAWTFE EEQVLVDAHR MHGNKWAEIA KLLPGRTDNS IKNHWNSSVR 60 KRLDEYDTGA ARNVPVHVSH NDLKQPAIAL PAENYIDLNE VPNISLRNHS GIVDHSDPTH 120 SPRVCSLKNI KGCSDFLSLS MPTAQPVTSC QASAADDSAV ALAIMGMKMD SGRDKDIELN 180 FVCQKGLQIN LSNEKGLEID PVTAKPDGRE STLVKEAQSF GSLCYQIPKL EDIDLVRSPV 240 LSRHHGSEHG VDGFQSPTGY ATPSPTDGKQ SDQLSVESIL KSAAENFPGT PSILRRRKRD 300 KPTPSQDTDF KIDANSDCFD TPKANCTTYS PHSFKTAPFL SLGRLDDQQL PSVLGKFDVS 360 PTYRLRSKRM AVLKTVEKHL DFSADAMDTC DMVGTLKSSC RNTESINASS DISSAHDRRI 420 NGHMIGLETL TSDFAYTTKL DAT

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

WISWHNHLDP QIRKEAWTFE EEQVLVDAHR MHGNKWAEIA KLLPGRTDNS IKNHWNSSVR  60
KRLDEYDTGA ARNVPVHVSH NDLKQPAIAL PAENYIDLNE VPNISLRNHS GIVDHSDPTH  120
SPRVCSLKNI KGCSDFLSLS MPTAQPVTSC QASAADDSAV ALAIMGMKMD SGRDKDIELN  180
FVCQKGLQIN LSNEKGLEID PVTAKPDGRE STLVKEAQSF GSLCYQIPKL EDIDLVRSPV  240
LSRHHGSEHG VDGFQSPTGY ATPSPTDGKQ SDQLSVESIL KSAAENFPGT PSILRRRKRD  300
KPTPSQDTDF KIDANSDCFD TPKANCTTYS PHSFKTAPFL SLGRLDDQQL PSVLGKFDVS  360
PTYRLRSKRM AVLKTVEKHL DFSADAMDTC DMVGTLKSSC RNTESINASS DISSAHDRRI  420
NGHMIGLETL TSDFAYTTKL DAT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	295	301	RRRKRDK
2	295	302	RRRKRDKP
3	296	302	RRRKRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	2e-28	MYB family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG042470.13