PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC1AG042470.10
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 523aa    MW: 58496.8 Da    PI: 6.7598
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC1AG042470.10genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-174288148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd+ +++ vk++G+  W+ Iar +  gR +kqc++rw+++l
  TRIDC1AG042470.10 42 KGPWTQEEDDTIIQKVKEHGPTKWSVIARSLH-GRIGKQCRERWHNHL 88
                       79******************************.*************97 PP
2Myb_DNA-binding59.95.7e-1994136145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        + +WT eE++ lvda++++G++ W+ Ia+ ++ gRt++++k++w+
  TRIDC1AG042470.10  94 KEAWTFEEEQVLVDAHRMHGNK-WAEIAKLLP-GRTDNSIKNHWN 136
                        579*******************.*********.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    
IFLKYRNLIE ESVLYTAEFF PDRTEVQCLH RWQKVLDPEL IKGPWTQEED DTIIQKVKEH  60
GPTKWSVIAR SLHGRIGKQC RERWHNHLDP QIRKEAWTFE EEQVLVDAHR MHGNKWAEIA  120
KLLPGRTDNS IKNHWNSSVR KRLDEYDTGA ARNVPVHVSH NDLKQPAIAL PAENYIDLNE  180
VPNISLRNHS GIVDHSDPTH SPRVCSLKNI KGCSDFLSLS MPTAQPVTSC QASAADDSAV  240
ALAIMGMKMD SGRDKDIELN FVCQKGLQIN LSNEKGLEID PVTAKPDGRE STLVKEAQSF  300
GSLCYQIPKL EDIDLVRSPV LSRHHGSEHG VDGFQSPTGY ATPSPTDGKQ SDQLSVESIL  360
KSAAENFPGT PSILRRRKRD KPTPSQDTDF KIDANSDCFD TPKANCTTYS PHSFKTAPFL  420
SLGRLDDQQL PSVLGKFDVS PTYRLRSKRM AVLKTVEKHL DFSADAMDTC DMVGTLKSSC  480
RNTESINASS DISSAHDRRI NGHMIGLETL TSDFAYTTKL DAT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1375381RRRKRDK
2375382RRRKRDKP
3376382RRRKRDK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.22e-73MYB family protein