PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC1AG039240.5
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 187aa    MW: 20934.2 Da    PI: 10.4911
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC1AG039240.5genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.22.6e-293383151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien++ rqvtf+kRrng+lKKA+ELSvLC+ae+a+i+fs +g+lyey+s
  TRIDC1AG039240.5 33 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCEAEIALIVFSARGRLYEYAS 83
                      79***********************************************86 PP
2K-box89.75.6e-30107180982
             K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 
                        + + +++ qqe+akL+ +i++Lq+ +R+l+Ge++++L+lkeL++Le++L+k++ +iR+kK+ell+++ie++qk
  TRIDC1AG039240.5 107 IDVNSQQYFQQESAKLRHQIQSLQNANRNLMGESVGNLTLKELKSLENRLDKGIGRIRAKKHELLFAEIEYMQK 180
                       5667789******************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    
MQIPVVSLVA LVIFVARRLE LLATMGRGKI EIKRIENTTS RQVTFCKRRN GLLKKAYELS  60
VLCEAEIALI VFSARGRLYE YASNSTRTTI DRYKKASASA SGSAPAIDVN SQQYFQQESA  120
KLRHQIQSLQ NANRNLMGES VGNLTLKELK SLENRLDKGI GRIRAKKHEL LFAEIEYMQK  180
LGGGSAE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.42e-75MIKC_MADS family protein