PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC1AG038860.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LBD | ||||||||
Protein Properties | Length: 213aa MW: 23684.9 Da PI: 11.4595 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 141 | 3.9e-44 | 54 | 152 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+++ TRIDC1AG038860.3 54 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELNPYQREDAVNSLAYEADMRLRDPVYGCVGVISVLQHQLRQLQQD 146 7******************************************************************************************** PP DUF260 94 lallke 99 l++++ TRIDC1AG038860.3 147 LSRARY 152 *99875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence |
WDLDLSFARK LDRPTHRSMA SSSASSFPGS VITMASSAAA VGAASSGAAG TGSPCAACKF 60 LRRKCQPDCV FAPYFPPDNP QKFVHVHRVF GASNVTKLLN ELNPYQREDA VNSLAYEADM 120 RLRDPVYGCV GVISVLQHQL RQLQQDLSRA RYELSKYQCA SFASRRLRRW RSRRLWGATG 180 RRQWRISSAT RCPTARRTSS TSATPRRSAR VLG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.3 | 1e-51 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC1AG038860.3 |