PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1AG038860.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LBD

Protein Properties

Length: 263aa MW: 27047.3 Da PI: 7.7804

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG038860.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.3	6.4e-44	37	135	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+++ TRIDC1AG038860.1 37 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELNPYQREDAVNSLAYEADMRLRDPVYGCVGVISVLQHQLRQLQQD 129 7******************************************************************************************** PP DUF260 94 lallke 99 l++++ TRIDC1AG038860.1 130 LSRARY 135 *99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence
SMASSSASSF PGSVITMASS AAAVGAASSG AAGTGSPCAA CKFLRRKCQP DCVFAPYFPP 60 DNPQKFVHVH RVFGASNVTK LLNELNPYQR EDAVNSLAYE ADMRLRDPVY GCVGVISVLQ 120 HQLRQLQQDL SRARYELSKY QAAVAVSASV GCNGAPAMAD FIGNTVPNCT QNFINISHST 180 AIGAGLGFGH DQFAAVQMLA RSYEGEGAVA RLGVNGGSGS GGYDFGYTSA MGVGPVSGLG 240 PLSGGPFLKP GTAGGDERHT AAQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.3	5e-52	LBD family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG038860.1