PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1AG038160.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

SBP

Protein Properties

Length: 687aa MW: 75904.2 Da PI: 7.536

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG038160.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	111.8	4e-35	33	108	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv+gCead+ e+k yh+rh+vC ++++++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k TRIDC1AG038160.5 33 RCQVPGCEADIRELKGYHKRHRVCLRCAHSSAVMIDGVQKRYCQQCGKFHILLDFDEDKRSCRRKLERHNKRRRRK 108 6************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence
RAASRGSSGA VVKTGGAGGG SGVAGRGGAA EMRCQVPGCE ADIRELKGYH KRHRVCLRCA 60 HSSAVMIDGV QKRYCQQCGK FHILLDFDED KRSCRRKLER HNKRRRRKPD SKGTLEKEID 120 EQLDLSADGS GSGEIREENI DGASCDMLET VLSNKVLDRE TPMGSEDALS SPTCTQLSLQ 180 NDRSKSIVTF AASAEACLGA KQENAKLTNS PVHDSKSAYS SSCPTGRISF KLYDWNPAEF 240 PRRLRNQLSE DTANLVRNLV NAPSSLLLGK GAFFVHANNT IFQVLKDGAT LMSTRLEVQA 300 PRIHCVHPTW FEAGKPIELL LCGSSLDQPK FRSLLSFDGE YLKHDCCRLT SRETFGCVKN 360 GASTFDSHHE VFRINITQTK PDTHGPGFVE VENVFGLSNF VPILFCSKQL CFELERIQDA 420 LCGSSKYKSA NGEFPGITSD PCEHWKLQQT AMSGFLIEIG WLIKKPSPDE FKKLLSKTNV 480 ERWICVLEFL IQNNFTNVLE MIVKSSDNII GSEILSNLES GRLEHHVTAF VGYIRHARII 540 VDQRAKHNEE TQLQTRWCGD SVSDQPSLGT SVPLGKENVT DSDDFCLPST NAECEEEVSV 600 PLVTNEAVSH RQCRAPEMNA RWLNPALVAP FPSGMMRTRL VATVAVAAIL CFTACVAVFH 660 PHRVGVLGAP VKRYLFSDCP PWHHSGC

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence

RAASRGSSGA VVKTGGAGGG SGVAGRGGAA EMRCQVPGCE ADIRELKGYH KRHRVCLRCA  60
HSSAVMIDGV QKRYCQQCGK FHILLDFDED KRSCRRKLER HNKRRRRKPD SKGTLEKEID  120
EQLDLSADGS GSGEIREENI DGASCDMLET VLSNKVLDRE TPMGSEDALS SPTCTQLSLQ  180
NDRSKSIVTF AASAEACLGA KQENAKLTNS PVHDSKSAYS SSCPTGRISF KLYDWNPAEF  240
PRRLRNQLSE DTANLVRNLV NAPSSLLLGK GAFFVHANNT IFQVLKDGAT LMSTRLEVQA  300
PRIHCVHPTW FEAGKPIELL LCGSSLDQPK FRSLLSFDGE YLKHDCCRLT SRETFGCVKN  360
GASTFDSHHE VFRINITQTK PDTHGPGFVE VENVFGLSNF VPILFCSKQL CFELERIQDA  420
LCGSSKYKSA NGEFPGITSD PCEHWKLQQT AMSGFLIEIG WLIKKPSPDE FKKLLSKTNV  480
ERWICVLEFL IQNNFTNVLE MIVKSSDNII GSEILSNLES GRLEHHVTAF VGYIRHARII  540
VDQRAKHNEE TQLQTRWCGD SVSDQPSLGT SVPLGKENVT DSDDFCLPST NAECEEEVSV  600
PLVTNEAVSH RQCRAPEMNA RWLNPALVAP FPSGMMRTRL VATVAVAAIL CFTACVAVFH  660
PHRVGVLGAP VKRYLFSDCP PWHHSGC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	109	KRSCRRKLERHNKRRRRKP
2	95	107	RRKLERHNKRRRR
3	102	109	NKRRRRKP
4	103	108	KRRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.3	1e-101	SBP family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG038160.5