PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC1AG038160.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | SBP | ||||||||
Protein Properties | Length: 732aa MW: 80668.9 Da PI: 7.3328 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 111.7 | 4.4e-35 | 44 | 119 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv+gCead+ e+k yh+rh+vC ++++++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k TRIDC1AG038160.4 44 RCQVPGCEADIRELKGYHKRHRVCLRCAHSSAVMIDGVQKRYCQQCGKFHILLDFDEDKRSCRRKLERHNKRRRRK 119 6************************************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 732 aa Download sequence |
AEALAGPRKK PRAASRGSSG AVVKTGGAGG GSGVAGRGGA AEMRCQVPGC EADIRELKGY 60 HKRHRVCLRC AHSSAVMIDG VQKRYCQQCG KFHILLDFDE DKRSCRRKLE RHNKRRRRKP 120 DSKGTLEKEI DEQLDLSADG SGSGEIREEN IDGASCDMLE TVLSNKVLDR ETPMGSEDAL 180 SSPTCTQLSL QNDRSKSIVT FAASAEACLG AKQENAKLTN SPVHDSKSAY SSSCPTGRIS 240 FKLYDWNPAE FPRRLRNQIF EWLSSMPVEL EGYIRPGCTI LTVFIAMPQH MWDKLSEDTA 300 NLVRNLVNAP SSLLLGKGAF FVHANNTIFQ VLKDGATLMS TRLEVQAPRI HCVHPTWFEA 360 GKPIELLLCG SSLDQPKFRS LLSFDGEYLK HDCCRLTSRE TFGCVKNGAS TFDSHHEVFR 420 INITQTKPDT HGPGFVEVEN VFGLSNFVPI LFCSKQLCFE LERIQDALCG SSKYKSANGE 480 FPGITSDPCE HWKLQQTAMS GFLIEIGWLI KKPSPDEFKK LLSKTNVERW ICVLEFLIQN 540 NFTNVLEMIV KSSDNIIGSE ILSNLESGRL EHHVTAFVGY IRHARIIVDQ RAKHNEETQL 600 QTRWCGDSVS DQPSLGTSVP LGKENVTDSD DFCLPSTNAE CEEEVSVPLV TNEAVSHRQC 660 RAPEMNARWL NPALVAPFPS GMMRTRLVAT VAVAAILCFT ACVAVFHPHR VGVLGAPVKS 720 SEPPGVSEGL IG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 120 | KRSCRRKLERHNKRRRRKP |
2 | 106 | 118 | RRKLERHNKRRRR |
3 | 113 | 120 | NKRRRRKP |
4 | 114 | 119 | KRRRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18830.1 | 1e-134 | SBP family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC1AG038160.4 |