PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1AG038160.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

SBP

Protein Properties

Length: 753aa MW: 82715.8 Da PI: 6.0382

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG038160.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	111.6	4.6e-35	169	244	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv+gCead+ e+k yh+rh+vC ++++++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k TRIDC1AG038160.2 169 RCQVPGCEADIRELKGYHKRHRVCLRCAHSSAVMIDGVQKRYCQQCGKFHILLDFDEDKRSCRRKLERHNKRRRRK 244 6************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 753 aa Download sequence
MDVSDSGGGG AAADAGEPVW DWDNLLDFTI PEDDSLLLPW DDPLGIEGDP TAEAALLPAP 60 PPPQPVEAEP APPPPSPPVE AGTSRRGVRK RDPRLVCPNY LAGIVPCACP ELDEMAAAAE 120 VEEVAAEALA GPRKKPRAAS RGSSGAVVKT GGAGGGSGVA GRGGAAEMRC QVPGCEADIR 180 ELKGYHKRHR VCLRCAHSSA VMIDGVQKRY CQQCGKFHIL LDFDEDKRSC RRKLERHNKR 240 RRRKPDSKGT LEKEIDEQLD LSADGSGSGE IREENIDGAS CDMLETVLSN KVLDRETPMG 300 SEDALSSPTC TQLSLQNDRS KSIVTFAASA EACLGAKQEN AKLTNSPVHD SKSAYSSSCP 360 TGRISFKLYD WNPAEFPRRL RNQIFEWLSS MPVELEGYIR PGCTILTVFI AMPQHMWDKL 420 SEDTANLVRN LVNAPSSLLL GKGAFFVHAN NTIFQVLKDG ATLMSTRLEV QAPRIHCVHP 480 TWFEAGKPIE LLLCGSSLDQ PKFRSLLSFD GEYLKHDCCR LTSRETFGCV KNGASTFDSH 540 HEVFRINITQ TKPDTHGPGF VEVENVFGLS NFVPILFCSK QLCFELERIQ DALCGSSKYK 600 SANGEFPGIT SDPCEHWKLQ QTAMSGFLIE IGWLIKKPSP DEFKKLLSKT NVERWICVLE 660 FLIQNNFTNV LEMIVKSSDN IIGSEILSNL ESGRLEHHVT AFVGYIRHAR IIVDQRAKHN 720 EETQLQTRWC GDSVSDQPSL GTSVPLGKEQ SKF

Sequence ? help Back to Top

Protein Sequence Length: 753 aa Download sequence

MDVSDSGGGG AAADAGEPVW DWDNLLDFTI PEDDSLLLPW DDPLGIEGDP TAEAALLPAP  60
PPPQPVEAEP APPPPSPPVE AGTSRRGVRK RDPRLVCPNY LAGIVPCACP ELDEMAAAAE  120
VEEVAAEALA GPRKKPRAAS RGSSGAVVKT GGAGGGSGVA GRGGAAEMRC QVPGCEADIR  180
ELKGYHKRHR VCLRCAHSSA VMIDGVQKRY CQQCGKFHIL LDFDEDKRSC RRKLERHNKR  240
RRRKPDSKGT LEKEIDEQLD LSADGSGSGE IREENIDGAS CDMLETVLSN KVLDRETPMG  300
SEDALSSPTC TQLSLQNDRS KSIVTFAASA EACLGAKQEN AKLTNSPVHD SKSAYSSSCP  360
TGRISFKLYD WNPAEFPRRL RNQIFEWLSS MPVELEGYIR PGCTILTVFI AMPQHMWDKL  420
SEDTANLVRN LVNAPSSLLL GKGAFFVHAN NTIFQVLKDG ATLMSTRLEV QAPRIHCVHP  480
TWFEAGKPIE LLLCGSSLDQ PKFRSLLSFD GEYLKHDCCR LTSRETFGCV KNGASTFDSH  540
HEVFRINITQ TKPDTHGPGF VEVENVFGLS NFVPILFCSK QLCFELERIQ DALCGSSKYK  600
SANGEFPGIT SDPCEHWKLQ QTAMSGFLIE IGWLIKKPSP DEFKKLLSKT NVERWICVLE  660
FLIQNNFTNV LEMIVKSSDN IIGSEILSNL ESGRLEHHVT AFVGYIRHAR IIVDQRAKHN  720
EETQLQTRWC GDSVSDQPSL GTSVPLGKEQ SKF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	227	245	KRSCRRKLERHNKRRRRKP
2	231	243	RRKLERHNKRRRR
3	238	245	NKRRRRKP
4	239	244	KRRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.2	1e-138	SBP family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG038160.2