PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC1AG038160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | SBP | ||||||||
Protein Properties | Length: 856aa MW: 93951.7 Da PI: 6.0972 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 111.4 | 5.4e-35 | 169 | 244 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv+gCead+ e+k yh+rh+vC ++++++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k TRIDC1AG038160.1 169 RCQVPGCEADIRELKGYHKRHRVCLRCAHSSAVMIDGVQKRYCQQCGKFHILLDFDEDKRSCRRKLERHNKRRRRK 244 6************************************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 856 aa Download sequence |
MDVSDSGGGG AAADAGEPVW DWDNLLDFTI PEDDSLLLPW DDPLGIEGDP TAEAALLPAP 60 PPPQPVEAEP APPPPSPPVE AGTSRRGVRK RDPRLVCPNY LAGIVPCACP ELDEMAAAAE 120 VEEVAAEALA GPRKKPRAAS RGSSGAVVKT GGAGGGSGVA GRGGAAEMRC QVPGCEADIR 180 ELKGYHKRHR VCLRCAHSSA VMIDGVQKRY CQQCGKFHIL LDFDEDKRSC RRKLERHNKR 240 RRRKPDSKGT LEKEIDEQLD LSADGSGSGE IREENIDGAS CDMLETVLSN KVLDRETPMG 300 SEDALSSPTC TQLSLQNDRS KSIVTFAASA EACLGAKQEN AKLTNSPVHD SKSAYSSSCP 360 TGRISFKLYD WNPAEFPRRL RNQIFEWLSS MPVELEGYIR PGCTILTVFI AMPQHMWDKL 420 SEDTANLVRN LVNAPSSLLL GKGAFFVHAN NTIFQVLKDG ATLMSTRLEV QAPRIHCVHP 480 TWFEAGKPIE LLLCGSSLDQ PKFRSLLSFD GEYLKHDCCR LTSRETFGCV KNGASTFDSH 540 HEVFRINITQ TKPDTHGPGF VEVENVFGLS NFVPILFCSK QLCFELERIQ DALCGSSKYK 600 SANGEFPGIT SDPCEHWKLQ QTAMSGFLIE IGWLIKKPSP DEFKKLLSKT NVERWICVLE 660 FLIQNNFTNV LEMIVKSSDN IIGSEILSNL ESGRLEHHVT AFVGYIRHAR IIVDQRAKHN 720 EETQLQTRWC GDSVSDQPSL GTSVPLGKEN VTDSDDFCLP STNAECEEEV SVPLVTNEAV 780 SHRQCRAPEM NARWLNPALV APFPSGMMRT RLVATVAVAA ILCFTACVAV FHPHRVGVLG 840 APVKRYLFSD CPPWHH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 227 | 245 | KRSCRRKLERHNKRRRRKP |
2 | 231 | 243 | RRKLERHNKRRRR |
3 | 238 | 245 | NKRRRRKP |
4 | 239 | 244 | KRRRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18830.3 | 1e-139 | SBP family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC1AG038160.1 |