PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC1AG029320.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 886aa MW: 95574.7 Da PI: 6.0761 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.6 | 1.3e-20 | 141 | 196 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++++e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k TRIDC1AG029320.6 141 KKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 196 688999***********************************************998 PP | |||||||
2 | START | 126.5 | 3.2e-40 | 359 | 603 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE.EXCCTTEEEEEEESSS...................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-T CS START 1 elaeeaaqelvkkalaeepgWvkss.esengdevlqkfeeskv..................dsgealrasgvvdmvlallveellddkeqWde 74 ela +aa+ l+k+ +ep+W + + +++ + ev+ +e ++ ++e r+s+vv+m++ +lv +ld + +W e TRIDC1AG029320.6 359 ELASTAADHLIKMCRTSEPLWARRRgTGPSSGEVMDAEEHARMlswpidsgkqqqsdvahsARTEGTRDSAVVIMNSITLVDAFLDAN-KWME 450 578999********************9999999999998888899999999999****99999*************************.**** PP T-S....EEEEEEEECTT........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--......-TTSEE-EES CS START 75 tla....kaetlevissg........galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe.....sssvvRaell 148 ++ ka t++vi g g l lm+ae+q+lsplvp R++vf Ry+ +g+w ivd d q+ +ss+vR++++ TRIDC1AG029320.6 451 LFPsivcKARTIQVIHHGaasghlssGSLILMQAEMQFLSPLVPaREVVFFRYCVHnADEGTWSIVDFPADGFQEELLqqqqqTSSLVRCRRR 543 ********************************************************9999*******88775444322333459********* PP SEEEEEEEECTCEEEEEEEE-EE--SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 149 pSgiliepksnghskvtwvehvdlkgrlp..hwllrslvksglaegaktwvatlqrqcek 206 pSg++i++ +ng+s+v wveh+++ g + +++ v g+a+ga +wv+ lqrqce+ TRIDC1AG029320.6 544 PSGCIIQDAPNGYSRVLWVEHMEVVGEEKplQPVFKDHVAGGAAFGATRWVSVLQRQCER 603 ***********************98876549***************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 886 aa Download sequence |
RRTMFGDCQV LSSMAAMAAG GSSADALFAS PLMPNPGALA GFMSNSSAMP FHHHFSTNLI 60 PKEEGVMGGL HLAKDEELDL DMEMELSGGS GSGHLDGLLS FADVDDDRDQ KPQHSEPDGA 120 GAGHHPSSSA AAAASNGNGK KKRYHRHTAH QIQQMEALFK ECPHPDDKQR LKLSQELGLK 180 PRQVKFWFQN RRTQMKAQQD RADNVILRAE NESLKTDNYR LQAAIRNVVC PSCGHAAVIG 240 DMSYEEQNLR IENARLKDEL DRLACIASRY GGGRQPGMSS ASALSCMSAP PPVLMPPLDL 300 DMNVYSRHFA EQQHGAMDLM ALPQQMAAGG HGIAATASYL QGPMTPVIVQ EQDKQLVMEL 360 ASTAADHLIK MCRTSEPLWA RRRGTGPSSG EVMDAEEHAR MLSWPIDSGK QQQSDVAHSA 420 RTEGTRDSAV VIMNSITLVD AFLDANKWME LFPSIVCKAR TIQVIHHGAA SGHLSSGSLI 480 LMQAEMQFLS PLVPAREVVF FRYCVHNADE GTWSIVDFPA DGFQEELLQQ QQQTSSLVRC 540 RRRPSGCIIQ DAPNGYSRVL WVEHMEVVGE EKPLQPVFKD HVAGGAAFGA TRWVSVLQRQ 600 CERLASELAR SIADQGVIRT PEARTNMMKL SQRMVTAFCA NISASGSQSW TALSDSTEDT 660 VRITTRKNTE PGQPSGVILT AVSTSWLPFS HQQVFELLAD EQQRCQLEIL SNGGSLHEVA 720 HIANGSHPRN CISLLRINSA SNSSQNVELL LQESSIHPDG GSLVVFATVD VDAIQVTMSG 780 EDPSYIPLLP MGFAIFPATS PSPGATSSDT TSNGESSPGN ADEPATGCLL TVGMQVLASA 840 VPSAKLNLSS VTAINSHICN TIHQITTALK GAGGSRTEPA PAGSDQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC1AG029320.6 |