PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1AG027190.8

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 954aa MW: 100133 Da PI: 6.6534

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG027190.8	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.4	7.9e-06	934	953	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ ++++G+C+ G++C+F H TRIDC1AG027190.8 934 ICK-YYENGHCWKGPSCSFVH 953 799.6666************* PP

Sequence ? help Back to Top
Protein Sequence Length: 954 aa Download sequence
MAPTYESAEE WNDETTVDLT INRNGPDLLF PGKEGTESNA VQYLSQKCPD ASCHSSLNLP 60 TEGVTHIPGA GSITNLQDAA SVPSSGVVSS DTEPEKVWHY KDPSGNVQGP FTLSQLSKWT 120 TYFPSGMKIW LTFESEENSL LLTEVLSTQK KDIIQPTPVI NNNKSAWAGS GQDRINPSMT 180 GNITSPIGYN VVYSSGLPSQ SSDHPPLRRE SPNFMGEALP STTCWEPLAS SVQIQHQANY 240 ASTIPSFAGS YRSTGPHGDG VPREKIGEHN NRQETGGLCS PTPAPKIHNS QSNMKPESCS 300 RSNLVDGRES NSALGIPSQS RAPACGAQST SFTCTSSSSK TKEIMNLQKP CPPDASNASV 360 NQLFEPKIDS VLSPGTQDQY PSPNPKFERK QPVMNKSGST SVAPEDSATK AYDHSSIAFV 420 SETSGPPSSK FVGLQLLKET QTSCVEERDL KDGGCVTQTA PLKGDATSAK RDNITVSSVS 480 DAGVCDVLGS LTEPNCGTYN VHAGMPLENV TPASAEEERP QCSSPIALSP WGEPSYYQGG 540 AVDSALWGVQ DDPSNDMWSL SSPTPALQPS SDLGADGKDT SCIIEEAVVA RGSSAVGEIS 600 PTPEEKMEKG NPSASTDCGV PEQVKLKPSA ALLNSSLKST EASGGQPLGS SLEGSTKASG 660 RQPVGSFLDG NTKVSGRQAS GQFLEGSTKA SVWQSGSCLE TSTKGSGWGS SVDGSTKGSG 720 WGSSVDGSTK GSGRGLSLEV NAKGSGWGSS LEGGTKGSGW GSSLEGGTKG SGWGSSLEGS 780 TQASGWLRSS SSPEGRKTPG RHSSARESSK VNFKSGSQNR NSSSGHQTTP TAKSSSEAQR 840 RQGSTNSNSA GWGEAPGSNK SWHPSSGSAS RGSQSNQHHD RHCHGNESRR GSYQGNDSRR 900 GSSNHSRRSS DHRQDHGSGM SSRSSSRGQS QRGICKYYEN GHCWKGPSCS FVHR

Sequence ? help Back to Top

Protein Sequence Length: 954 aa Download sequence

MAPTYESAEE WNDETTVDLT INRNGPDLLF PGKEGTESNA VQYLSQKCPD ASCHSSLNLP  60
TEGVTHIPGA GSITNLQDAA SVPSSGVVSS DTEPEKVWHY KDPSGNVQGP FTLSQLSKWT  120
TYFPSGMKIW LTFESEENSL LLTEVLSTQK KDIIQPTPVI NNNKSAWAGS GQDRINPSMT  180
GNITSPIGYN VVYSSGLPSQ SSDHPPLRRE SPNFMGEALP STTCWEPLAS SVQIQHQANY  240
ASTIPSFAGS YRSTGPHGDG VPREKIGEHN NRQETGGLCS PTPAPKIHNS QSNMKPESCS  300
RSNLVDGRES NSALGIPSQS RAPACGAQST SFTCTSSSSK TKEIMNLQKP CPPDASNASV  360
NQLFEPKIDS VLSPGTQDQY PSPNPKFERK QPVMNKSGST SVAPEDSATK AYDHSSIAFV  420
SETSGPPSSK FVGLQLLKET QTSCVEERDL KDGGCVTQTA PLKGDATSAK RDNITVSSVS  480
DAGVCDVLGS LTEPNCGTYN VHAGMPLENV TPASAEEERP QCSSPIALSP WGEPSYYQGG  540
AVDSALWGVQ DDPSNDMWSL SSPTPALQPS SDLGADGKDT SCIIEEAVVA RGSSAVGEIS  600
PTPEEKMEKG NPSASTDCGV PEQVKLKPSA ALLNSSLKST EASGGQPLGS SLEGSTKASG  660
RQPVGSFLDG NTKVSGRQAS GQFLEGSTKA SVWQSGSCLE TSTKGSGWGS SVDGSTKGSG  720
WGSSVDGSTK GSGRGLSLEV NAKGSGWGSS LEGGTKGSGW GSSLEGGTKG SGWGSSLEGS  780
TQASGWLRSS SSPEGRKTPG RHSSARESSK VNFKSGSQNR NSSSGHQTTP TAKSSSEAQR  840
RQGSTNSNSA GWGEAPGSNK SWHPSSGSAS RGSQSNQHHD RHCHGNESRR GSYQGNDSRR  900
GSSNHSRRSS DHRQDHGSGM SSRSSSRGQS QRGICKYYEN GHCWKGPSCS FVHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	8e-15	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG027190.8