PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1AG027190.6

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 1055aa MW: 111761 Da PI: 6.571

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG027190.6	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.2	8.8e-06	1035	1054	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ ++++G+C+ G++C+F H TRIDC1AG027190.6 1035 ICK-YYENGHCWKGPSCSFVH 1054 799.6666************* PP

Sequence ? help Back to Top
Protein Sequence Length: 1055 aa Download sequence
MQTLTPEHEG DIYEIAKSFQ SLQINDWLVN EKQRLSHLRD RASETGRRKE LRECVEKLQL 60 LNTPEEIARK INEVPEVHVD PHMAPTYESA EEWNDETTVD LTINRNGPDL LFPGKEGTES 120 NAVQYLSQKC PDASCHSSLN LPTEGVTHIP GAGSITNLQA ANGLNIPRPR IDLNNTAGDA 180 ASVPSSGVVS SDTEPEKVWH YKDPSGNVQG PFTLSQLSKW TTYFPSGMKI WLTFESEENS 240 LLLTEVLSTQ KKDIIQPTPV INNNKSAWAG SGQDRINPSM TGNITSPIGY NVVYSSGLPS 300 QSSDHPPLRR ESPNFMGEAL PSTTCWEPLA SSVQIQHQAN YASTIPSFAG SYRSTGPHGD 360 GVPREKIGEH NNRQETGGLC SPTPAPKIHN SQSNMKPESC SRSNLVDGRE SNSALGIPSQ 420 SRAPACGAQS TSFTCTSSSS KTKEIMNLQK PCPPDASNAS VNQLFEPKID SVLSPGTQDQ 480 YPSPNPKFER KQPVMNKSGS TSVAPEDSAT KAYDHSSIAF VSETSGPPSS KFVGLQLLKE 540 TQTSCVEERD LKDGGCVTQT APLKGDATSA KRDNITVSSV SDAGVCDVLG SLTEPNCGTY 600 NVHAGMPLEN VTPASAEEER PQCSSPIALS PWGEPSYYQG GAVDSALWGV QDDPSNDMWS 660 LSSPTPALQP SSDLGADGKD TSCIIEEAVV ARGSSAVGEI SPTPEEKMEK GNPSASTDCG 720 VPEQVKLKPS AALLNSSLKS TEASGGQPLG SSLEGSTKAS GRQPVGSFLD GNTKVSGRQA 780 SGQFLEGSTK ASVWQSGSCL ETSTKGSGWG SSVDGSTKGS GWGSSVDGST KGSGRGLSLE 840 VNAKGSGWGS SLEGGTKGSG WGSSLEGGTK GSGWGSSLEG STQASGWLRS SSSPEGRKTP 900 GRHSSARESS KVNFKSGSQN RNSSSGHQTT PTAKSSSEAQ RRQGSTNSNS AGWGEAPGSN 960 KSWHPSSGSA SRGSQSNQHH DRHCHGNESR RGSYQGNDSR RGSSNHSRRS SDHRQDHGSG 1020 MSSRSSSRGQ SQRGICKYYE NGHCWKGPSC SFVHR

Sequence ? help Back to Top

Protein Sequence Length: 1055 aa Download sequence

MQTLTPEHEG DIYEIAKSFQ SLQINDWLVN EKQRLSHLRD RASETGRRKE LRECVEKLQL  60
LNTPEEIARK INEVPEVHVD PHMAPTYESA EEWNDETTVD LTINRNGPDL LFPGKEGTES  120
NAVQYLSQKC PDASCHSSLN LPTEGVTHIP GAGSITNLQA ANGLNIPRPR IDLNNTAGDA  180
ASVPSSGVVS SDTEPEKVWH YKDPSGNVQG PFTLSQLSKW TTYFPSGMKI WLTFESEENS  240
LLLTEVLSTQ KKDIIQPTPV INNNKSAWAG SGQDRINPSM TGNITSPIGY NVVYSSGLPS  300
QSSDHPPLRR ESPNFMGEAL PSTTCWEPLA SSVQIQHQAN YASTIPSFAG SYRSTGPHGD  360
GVPREKIGEH NNRQETGGLC SPTPAPKIHN SQSNMKPESC SRSNLVDGRE SNSALGIPSQ  420
SRAPACGAQS TSFTCTSSSS KTKEIMNLQK PCPPDASNAS VNQLFEPKID SVLSPGTQDQ  480
YPSPNPKFER KQPVMNKSGS TSVAPEDSAT KAYDHSSIAF VSETSGPPSS KFVGLQLLKE  540
TQTSCVEERD LKDGGCVTQT APLKGDATSA KRDNITVSSV SDAGVCDVLG SLTEPNCGTY  600
NVHAGMPLEN VTPASAEEER PQCSSPIALS PWGEPSYYQG GAVDSALWGV QDDPSNDMWS  660
LSSPTPALQP SSDLGADGKD TSCIIEEAVV ARGSSAVGEI SPTPEEKMEK GNPSASTDCG  720
VPEQVKLKPS AALLNSSLKS TEASGGQPLG SSLEGSTKAS GRQPVGSFLD GNTKVSGRQA  780
SGQFLEGSTK ASVWQSGSCL ETSTKGSGWG SSVDGSTKGS GWGSSVDGST KGSGRGLSLE  840
VNAKGSGWGS SLEGGTKGSG WGSSLEGGTK GSGWGSSLEG STQASGWLRS SSSPEGRKTP  900
GRHSSARESS KVNFKSGSQN RNSSSGHQTT PTAKSSSEAQ RRQGSTNSNS AGWGEAPGSN  960
KSWHPSSGSA SRGSQSNQHH DRHCHGNESR RGSYQGNDSR RGSSNHSRRS SDHRQDHGSG  1020
MSSRSSSRGQ SQRGICKYYE NGHCWKGPSC SFVHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	1e-20	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG027190.6