PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1AG027190.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 1114aa MW: 118500 Da PI: 6.8971

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG027190.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.2	9.4e-06	1094	1113	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ ++++G+C+ G++C+F H TRIDC1AG027190.1 1094 ICK-YYENGHCWKGPSCSFVH 1113 799.6666************* PP

Sequence ? help Back to Top
Protein Sequence Length: 1114 aa Download sequence
MILYAGTHKV AERYSVGKKT TDCALEISNL DKKEVITMDT ISNQDFTQDE CKRLRQSMKY 60 GLIPRLKVGD IYEIAKSFQS LQINDWLVNE KQRLSHLRDR ASETGRRKEL RECVEKLQLL 120 NTPEEIARKI NEVPEVHVDP HMAPTYESAE EWNDETTVDL TINRNGPDLL FPGKEGTESN 180 AVQYLSQKCP DASCHSSLNL PTEGVTHIPG AGSITNLQAA NGLNIPRPRI DLNNTAGDAA 240 SVPSSGVVSS DTEPEKVWHY KDPSGNVQGP FTLSQLSKWT TYFPSGMKIW LTFESEENSL 300 LLTEVLSTQK KDIIQPTPVI NNNKSAWAGS GQDRINPSMT GNITSPIGYN VVYSSGLPSQ 360 SSDHPPLRRE SPNFMGEALP STTCWEPLAS SVQIQHQANY ASTIPSFAGS YRSTGPHGDG 420 VPREKIGEHN NRQETGGLCS PTPAPKIHNS QSNMKPESCS RSNLVDGRES NSALGIPSQS 480 RAPACGAQST SFTCTSSSSK TKEIMNLQKP CPPDASNASV NQLFEPKIDS VLSPGTQDQY 540 PSPNPKFERK QPVMNKSGST SVAPEDSATK AYDHSSIAFV SETSGPPSSK FVGLQLLKET 600 QTSCVEERDL KDGGCVTQTA PLKGDATSAK RDNITVSSVS DAGVCDVLGS LTEPNCGTYN 660 VHAGMPLENV TPASAEEERP QCSSPIALSP WGEPSYYQGG AVDSALWGVQ DDPSNDMWSL 720 SSPTPALQPS SDLGADGKDT SCIIEEAVVA RGSSAVGEIS PTPEEKMEKG NPSASTDCGV 780 PEQVKLKPSA ALLNSSLKST EASGGQPLGS SLEGSTKASG RQPVGSFLDG NTKVSGRQAS 840 GQFLEGSTKA SVWQSGSCLE TSTKGSGWGS SVDGSTKGSG WGSSVDGSTK GSGRGLSLEV 900 NAKGSGWGSS LEGGTKGSGW GSSLEGGTKG SGWGSSLEGS TQASGWLRSS SSPEGRKTPG 960 RHSSARESSK VNFKSGSQNR NSSSGHQTTP TAKSSSEAQR RQGSTNSNSA GWGEAPGSNK 1020 SWHPSSGSAS RGSQSNQHHD RHCHGNESRR GSYQGNDSRR GSSNHSRRSS DHRQDHGSGM 1080 SSRSSSRGQS QRGICKYYEN GHCWKGPSCS FVHR

Sequence ? help Back to Top

Protein Sequence Length: 1114 aa Download sequence

MILYAGTHKV AERYSVGKKT TDCALEISNL DKKEVITMDT ISNQDFTQDE CKRLRQSMKY  60
GLIPRLKVGD IYEIAKSFQS LQINDWLVNE KQRLSHLRDR ASETGRRKEL RECVEKLQLL  120
NTPEEIARKI NEVPEVHVDP HMAPTYESAE EWNDETTVDL TINRNGPDLL FPGKEGTESN  180
AVQYLSQKCP DASCHSSLNL PTEGVTHIPG AGSITNLQAA NGLNIPRPRI DLNNTAGDAA  240
SVPSSGVVSS DTEPEKVWHY KDPSGNVQGP FTLSQLSKWT TYFPSGMKIW LTFESEENSL  300
LLTEVLSTQK KDIIQPTPVI NNNKSAWAGS GQDRINPSMT GNITSPIGYN VVYSSGLPSQ  360
SSDHPPLRRE SPNFMGEALP STTCWEPLAS SVQIQHQANY ASTIPSFAGS YRSTGPHGDG  420
VPREKIGEHN NRQETGGLCS PTPAPKIHNS QSNMKPESCS RSNLVDGRES NSALGIPSQS  480
RAPACGAQST SFTCTSSSSK TKEIMNLQKP CPPDASNASV NQLFEPKIDS VLSPGTQDQY  540
PSPNPKFERK QPVMNKSGST SVAPEDSATK AYDHSSIAFV SETSGPPSSK FVGLQLLKET  600
QTSCVEERDL KDGGCVTQTA PLKGDATSAK RDNITVSSVS DAGVCDVLGS LTEPNCGTYN  660
VHAGMPLENV TPASAEEERP QCSSPIALSP WGEPSYYQGG AVDSALWGVQ DDPSNDMWSL  720
SSPTPALQPS SDLGADGKDT SCIIEEAVVA RGSSAVGEIS PTPEEKMEKG NPSASTDCGV  780
PEQVKLKPSA ALLNSSLKST EASGGQPLGS SLEGSTKASG RQPVGSFLDG NTKVSGRQAS  840
GQFLEGSTKA SVWQSGSCLE TSTKGSGWGS SVDGSTKGSG WGSSVDGSTK GSGRGLSLEV  900
NAKGSGWGSS LEGGTKGSGW GSSLEGGTKG SGWGSSLEGS TQASGWLRSS SSPEGRKTPG  960
RHSSARESSK VNFKSGSQNR NSSSGHQTTP TAKSSSEAQR RQGSTNSNSA GWGEAPGSNK  1020
SWHPSSGSAS RGSQSNQHHD RHCHGNESRR GSYQGNDSRR GSSNHSRRSS DHRQDHGSGM  1080
SSRSSSRGQS QRGICKYYEN GHCWKGPSCS FVHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	3e-48	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG027190.1