PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC1AG018130.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 247aa MW: 27747.2 Da PI: 10.6908 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.6 | 5.2e-31 | 93 | 143 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs +g+lyeys+ TRIDC1AG018130.5 93 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSGRGRLYEYSN 143 79***********************************************95 PP | |||||||
2 | K-box | 88.4 | 1.4e-29 | 160 | 244 | 3 | 87 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 +ss ++e +a+++qqe+akLk++i +Lq+++R l+G+ + ++s+++L+qLe +L+k+l kiR++Knell+++ie++q++ +++ TRIDC1AG018130.5 160 TSSAGTVAEINAQHYQQESAKLKQQITTLQNSNRTLIGDTMATMSHRDLKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRVRNT 244 4455559999***********************************************************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence |
MATTGWGNSR YARRGRDSAR GSGAYSLRKP QRERHHQGEE MDHSLSFSSY LQRRVQEVAA 60 QENRVKESAS PGSGSGSAGG AAEKMGRGRI EIKRIENTTN RQVTFCKRRN GLLKKAYELS 120 VLCDAEVALI VFSGRGRLYE YSNNSVKATI ERYKKATSDT SSAGTVAEIN AQHYQQESAK 180 LKQQITTLQN SNRTLIGDTM ATMSHRDLKQ LEGRLDKGLG KIRARKNELL CAEIEYMQRR 240 VRNTIKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 2e-87 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC1AG018130.5 |