PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY43254.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

M-type_MADS

Protein Properties

Length: 525aa MW: 60550.6 Da PI: 10.3521

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY43254.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	44.9	1.5e-14	262	304	3	45
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ie + r++tf kR++g++ K +E +LCd+++++ii++++++ TEY43254.1 262 IEKEKSRNTTFKKRKEGLIRKLSEFTTLCDVKACMIIYGPNQT 304 89999***********************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence
MLLRQIPKRC IYTAAALPEP RPWLFVGLGN PGDKFMGTRH NVGFEFIDAF AKSHGIAMDS 60 VHCKAIFGKG TLHMIDYACA KNLNHFDFVI SWMWFSGIIN MVPVFLSKPQ TYMNLSGESS 120 GPLAAYYKLP LNRVLVLHDD MTLPCGVLRL NPLGNHGSHN GMKSVINHFR GNREFPRLRI 180 GIGRPAGQMD PKAFLLQKFN VRARERIDAA LQEGVDTLTQ VLSKGLTESA RCFNKEQKYK 240 HLRLQTMPLS KMGRAKLKME LIEKEKSRNT TFKKRKEGLI RKLSEFTTLC DVKACMIIYG 300 PNQTRPEIWP PQDPEEVRRF IDLYKSKSSG SVRKSGVVEF FNERKRQIED ELKKLKRKNQ 360 EAKYPTRPEL LNVISEHQLR HLHAELTDKA RCVRSRIELL KMKQRPQTEQ NAMLMDHRRL 420 HPSPVMVGIG SSNAANMQMK RQIYYESASG FYQSWPQYMV QPPLPLPPLP PQQPYLLQAM 480 VQPQMQFLGN QEEMMMMRNQ AVRAHNLNQD GVKYEDFTNN RMFSC

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence

MLLRQIPKRC IYTAAALPEP RPWLFVGLGN PGDKFMGTRH NVGFEFIDAF AKSHGIAMDS  60
VHCKAIFGKG TLHMIDYACA KNLNHFDFVI SWMWFSGIIN MVPVFLSKPQ TYMNLSGESS  120
GPLAAYYKLP LNRVLVLHDD MTLPCGVLRL NPLGNHGSHN GMKSVINHFR GNREFPRLRI  180
GIGRPAGQMD PKAFLLQKFN VRARERIDAA LQEGVDTLTQ VLSKGLTESA RCFNKEQKYK  240
HLRLQTMPLS KMGRAKLKME LIEKEKSRNT TFKKRKEGLI RKLSEFTTLC DVKACMIIYG  300
PNQTRPEIWP PQDPEEVRRF IDLYKSKSSG SVRKSGVVEF FNERKRQIED ELKKLKRKNQ  360
EAKYPTRPEL LNVISEHQLR HLHAELTDKA RCVRSRIELL KMKQRPQTEQ NAMLMDHRRL  420
HPSPVMVGIG SSNAANMQMK RQIYYESASG FYQSWPQYMV QPPLPLPPLP PQQPYLLQAM  480
VQPQMQFLGN QEEMMMMRNQ AVRAHNLNQD GVKYEDFTNN RMFSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	9e-17	M-type_MADS family protein