PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY37625.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 502aa MW: 57023.8 Da PI: 7.2782

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY37625.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.8	6.6e-07	7	30	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC+ f+r G C++ C+FaHg TEY37625.1 7 YKTKLCMLFQR-GRCSR-QFCNFAHG 30 9********.*.*****9 PP

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence
MVERKLYKTK LCMLFQRGRC SRQFCNFAHG DAELRRSFNA DLSEYCLYFY GSYGICKKAL 60 KLIIIMLLIC TSNGKLSLIL SVTGLGTLVG SVVRLQLINI CFMTFLHLAG NQEFRGGGDL 120 RERLDRIRSP LRNSPDRRDA RARHTSHGDS PRSLGKGIDR NVRKRRRFDG HSDYSGRMSD 180 GTEDQIKDRR PASSEAKMQI DEQLREIHSE IKLLEDDKQQ LQMYLEEKVN EADSLTFKIH 240 DLEMQLSKEK EEGKRFSTKI KKFIKAHNRH SRLQEELKRS QAQFQKLGEQ LDSDVGVGNE 300 DDTKTKASND DVKGGFTSPL NEGQLNSSPL RKRSRFSLEA QEASPQVGGR ADMGKSKVEK 360 PHRSSRNQEN FSNTKKSEAD ADTYNSRWRS TYEEKSRKGS NLPADTDSTD KYKVTETGII 420 LPSTGIAANA IDEDVEVAET DERYQVPSNG PNGSEDRFKT SRLPFLPLPP PIPQNAYMQY 480 EGDDENVDVD EADEETVEVD IV

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence

MVERKLYKTK LCMLFQRGRC SRQFCNFAHG DAELRRSFNA DLSEYCLYFY GSYGICKKAL  60
KLIIIMLLIC TSNGKLSLIL SVTGLGTLVG SVVRLQLINI CFMTFLHLAG NQEFRGGGDL  120
RERLDRIRSP LRNSPDRRDA RARHTSHGDS PRSLGKGIDR NVRKRRRFDG HSDYSGRMSD  180
GTEDQIKDRR PASSEAKMQI DEQLREIHSE IKLLEDDKQQ LQMYLEEKVN EADSLTFKIH  240
DLEMQLSKEK EEGKRFSTKI KKFIKAHNRH SRLQEELKRS QAQFQKLGEQ LDSDVGVGNE  300
DDTKTKASND DVKGGFTSPL NEGQLNSSPL RKRSRFSLEA QEASPQVGGR ADMGKSKVEK  360
PHRSSRNQEN FSNTKKSEAD ADTYNSRWRS TYEEKSRKGS NLPADTDSTD KYKVTETGII  420
LPSTGIAANA IDEDVEVAET DERYQVPSNG PNGSEDRFKT SRLPFLPLPP PIPQNAYMQY  480
EGDDENVDVD EADEETVEVD IV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	167	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21810.1	2e-27	C3H family protein