PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY28771.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 481aa MW: 55569.1 Da PI: 9.1432

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY28771.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.6	3.9e-07	453	475	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k+ Cr+f + G C++GdrCkF+H TEY28771.1 453 KQQKCRYFGQ-GRCHFGDRCKFSH 475 7788****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence
MEFPEEECYT ESESGSQFSD DSQNDPNFDI EETRLTLSNL SLKRKSKILK INRDEEGDEL 60 DEKDKKSYEI IKKMIEGGQV EKLKVDECKI YLRNHGLRLS GKKDILIQRI KEHVDIVNGG 120 GEVKYPQSSF VLNCKGDACK GDVVIFEQNV YDEFSIVSRS SKGGVCGTRI VAGRILKESY 180 GAAKQQHTFT IEVLWSKGEK PLPPLHPLLI KGRNLYRLKT MRQVCFVCVC VCLFIILHIS 240 INQVLQPTLI ANQKWEDEGE RQRILLEKHA RGGAARSNRE ARIQQKEKRQ TERAAMNDHP 300 NGKQEYKRSK PDQQINRPQQ QQHEAHFYAA TQELNIPTQP VKLDGNPNYS RRQPLMATNC 360 NFQRAQKTDL HPSIVPILKS PTQEERYLKY PIYRSPVRGH PQIFPSYPNH PDFPVQRHTF 420 KENMGYSQQS FAYHIQNMNA VGSLPVYQQG FEKQQKCRYF GQGRCHFGDR CKFSHELASN 480 R

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence

MEFPEEECYT ESESGSQFSD DSQNDPNFDI EETRLTLSNL SLKRKSKILK INRDEEGDEL  60
DEKDKKSYEI IKKMIEGGQV EKLKVDECKI YLRNHGLRLS GKKDILIQRI KEHVDIVNGG  120
GEVKYPQSSF VLNCKGDACK GDVVIFEQNV YDEFSIVSRS SKGGVCGTRI VAGRILKESY  180
GAAKQQHTFT IEVLWSKGEK PLPPLHPLLI KGRNLYRLKT MRQVCFVCVC VCLFIILHIS  240
INQVLQPTLI ANQKWEDEGE RQRILLEKHA RGGAARSNRE ARIQQKEKRQ TERAAMNDHP  300
NGKQEYKRSK PDQQINRPQQ QQHEAHFYAA TQELNIPTQP VKLDGNPNYS RRQPLMATNC  360
NFQRAQKTDL HPSIVPILKS PTQEERYLKY PIYRSPVRGH PQIFPSYPNH PDFPVQRHTF  420
KENMGYSQQS FAYHIQNMNA VGSLPVYQQG FEKQQKCRYF GQGRCHFGDR CKFSHELASN  480
R