PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY25815.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 623aa MW: 67445.6 Da PI: 7.2983

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY25815.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.1	5.4e-07	258	278	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f + G C GdrC +aHg TEY25815.1 258 PCPEFKK-GNCGKGDRCEYAHG 278 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 623 aa Download sequence
MCSDSKSGHS LSDLEMKAGF HVGKHGNCSE LLEFAATDDL AGFLHEVEGR GCDVDEVSCW 60 YGRSFGWKKM GYEERTPIMI AALYGSTEVL GYIITTGRVD VNRACGSDGA TALHCAAAGG 120 SWSSVEVVEL LMAASADSSV VDVSGRKPGD LIAPCVRSSA NPRRKQLEML LNGVSSKGEE 180 EGSKTPLAVS ERKEYPIDIS LPDINNGVYG SDEFRMYTFK VKPCSRAYSH DWTECPFVHP 240 GENARRRDPR KYHYTCVPCP EFKKGNCGKG DRCEYAHGVF ESWLHPAQYR TRLCKDEMGC 300 SRKVCFFAHK PEELRPLYAS TGSAMPSPKT LSALDMATTL MMTSNTSTPP TSPSVTCSSP 360 MGGNMWPNKM SLATPPALQL PGSRLKTALS ARDVDLDLKM LGLDRIRTQH GQQLVEEMAS 420 LSSPYSRMAD LTPTNLDDVY GSINPSLLSQ LQGMSPKING SQMQSPTRQN MNQLRASYPT 480 NVSSSPSRNP SVYGFDSSAA VAAAVMNSRS AAFSKRSQSF IDRSGGNGYH YGPTANSPGG 540 VMPPNHSEWG APDGKLEWGF NDEEVNRLRK SASFGFRSDS AGVNARSNAG EPDVSWVNTL 600 VKDVPASGNT GMYSPHQRQA AGG

Sequence ? help Back to Top

Protein Sequence Length: 623 aa Download sequence

MCSDSKSGHS LSDLEMKAGF HVGKHGNCSE LLEFAATDDL AGFLHEVEGR GCDVDEVSCW  60
YGRSFGWKKM GYEERTPIMI AALYGSTEVL GYIITTGRVD VNRACGSDGA TALHCAAAGG  120
SWSSVEVVEL LMAASADSSV VDVSGRKPGD LIAPCVRSSA NPRRKQLEML LNGVSSKGEE  180
EGSKTPLAVS ERKEYPIDIS LPDINNGVYG SDEFRMYTFK VKPCSRAYSH DWTECPFVHP  240
GENARRRDPR KYHYTCVPCP EFKKGNCGKG DRCEYAHGVF ESWLHPAQYR TRLCKDEMGC  300
SRKVCFFAHK PEELRPLYAS TGSAMPSPKT LSALDMATTL MMTSNTSTPP TSPSVTCSSP  360
MGGNMWPNKM SLATPPALQL PGSRLKTALS ARDVDLDLKM LGLDRIRTQH GQQLVEEMAS  420
LSSPYSRMAD LTPTNLDDVY GSINPSLLSQ LQGMSPKING SQMQSPTRQN MNQLRASYPT  480
NVSSSPSRNP SVYGFDSSAA VAAAVMNSRS AAFSKRSQSF IDRSGGNGYH YGPTANSPGG  540
VMPPNHSEWG APDGKLEWGF NDEEVNRLRK SASFGFRSDS AGVNARSNAG EPDVSWVNTL  600
VKDVPASGNT GMYSPHQRQA AGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	1e-171	C3H family protein