PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TEY23428.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 302aa MW: 33608 Da PI: 6.8019 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.9 | 4.2e-21 | 106 | 153 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ien++n qvtfskRr+g++KKA+EL +LC+ae a+++fs+ +k + + TEY23428.1 106 KIENDTNLQVTFSKRRAGVFKKASELGTLCGAECALVVFSPGNKPHSF 153 79***************************************9987766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence |
MLQRQQELAN VEAQLEREKQ RKRELEAMQV PLMQMDDVTY EQLEQLRNSL MVFKHGAEAK 60 LNVGMELGNG NNDYPMHPEG GNDHMMHPEN EQRMKGKGRQ KIEMAKIEND TNLQVTFSKR 120 RAGVFKKASE LGTLCGAECA LVVFSPGNKP HSFGHPSVEA VTNRFLQANG GGGVAPALVN 180 AAERMIMVHS EAATAQRNKE LVGLETRVEQ AKQRRRELDG MVPPLQMENL SYEQLEQLRN 240 SVLMYKHGVG AKFGGGAASS VGPEYGYTVQ YPAMGAYNYE DPSAVVPYDP ATGNYHHHHP 300 GY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 5e-32 | M-type_MADS family protein |