PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY23358.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 384aa MW: 41878.9 Da PI: 8.9342

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY23358.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21	6.1e-07	336	358	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ff C+ Gd+C+++H+ TEY23358.1 336 KPCMFFNTPRGCRNGDNCTYSHD 358 69********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MGESKKSKRI TWASEVNLCQ VRLFSSAKPP SEVGMCNMAN ETLPPGFEYM KPKILKFYKK 60 SFTKWKCPPR FEVNREWKVV SGEESTEIEF QNQRERIVLE ATYPRPSAIP PNPRLPVNAP 120 GSIVDDRSTP LIRMTPIEEA DAELAPSVSH AADSCPMIPQ PQHYCAEGNS MQPNIAQAAL 180 AAVSSNKDQM NLIDCELLVR ILNNPKSLQQ LLAISFGTQH VPNMKPPRSS DSTISTNGGA 240 SVPELNAPYD TTRAAPPHLS TGFVSTACTP PVADVSAAHC NGVAKDMNYY KSLIQQHGGS 300 GGGVSAQSCG IMSKRMTGAA QEFTKSRDVL KSRTVKPCMF FNTPRGCRNG DNCTYSHDVN 360 VLSSRKRMGC VTEVVGVKRV KLGS

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MGESKKSKRI TWASEVNLCQ VRLFSSAKPP SEVGMCNMAN ETLPPGFEYM KPKILKFYKK  60
SFTKWKCPPR FEVNREWKVV SGEESTEIEF QNQRERIVLE ATYPRPSAIP PNPRLPVNAP  120
GSIVDDRSTP LIRMTPIEEA DAELAPSVSH AADSCPMIPQ PQHYCAEGNS MQPNIAQAAL  180
AAVSSNKDQM NLIDCELLVR ILNNPKSLQQ LLAISFGTQH VPNMKPPRSS DSTISTNGGA  240
SVPELNAPYD TTRAAPPHLS TGFVSTACTP PVADVSAAHC NGVAKDMNYY KSLIQQHGGS  300
GGGVSAQSCG IMSKRMTGAA QEFTKSRDVL KSRTVKPCMF FNTPRGCRNG DNCTYSHDVN  360
VLSSRKRMGC VTEVVGVKRV KLGS