PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G34175

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 522aa MW: 55894 Da PI: 4.6099

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G34175	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.2	1.6e-17	39	86	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lv++vk++G g+W+++ ++ g+ R++k+c++rw ++l Ro07_G34175 39 KGPWTSAEDAILVEYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 86 79******************************************9986 PP
2	Myb_DNA-binding	24.2	7.6e-08	92	120	1	30
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +g++T+eE+ l+v++++++G++ W++ a++ Ro07_G34175 92 KGAFTPEEERLIVELHAKMGNK-WARMAAH 120 799*****************.*9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence
MSLITSDSDD GLLSKDQIES PLMDDGNGGI GIGGIVLKKG PWTSAEDAIL VEYVKKHGEG 60 NWNAVQKHSG LFRCGKSCRL RWANHLRPNL KKGAFTPEEE RLIVELHAKM GNKWARMAAH 120 ESQQGQSNGA LNSTDGAHHD SLQTNSYEIP DVVFDSLKGN SCVLPYVPEL PDISASGMLM 180 KGLGSSPYCG FMPPTLHRQK RPRESTALFP TSGGSFKNGF PQFDQFENDA CDKVAPSFGL 240 SFPHDPDPTA KSPLPFGVIP GSHSLSNGNS SASKPTCGAV KLELPSLQYP ETDLGSWSTS 300 PPPPLLESID NFIQSPPPVG AFESDCASPR NSGLLDALLY EAKTLSSTKN HSTDKSSNSS 360 SVTPGEVADS STLNVCETEW EEYGDPISPL GHSATSLFSE CTPISTSGSS LEEAPPAETL 420 TGSDVKLEPV DHTWTPEKEK QTSPPVDYTR PDALLGSDWL EPNTGFKDHS IMTDAIASLL 480 GEDLANDYKH MASGTSTSNQ GWGLGSCPWN NMPAVCQMSD LP

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence

MSLITSDSDD GLLSKDQIES PLMDDGNGGI GIGGIVLKKG PWTSAEDAIL VEYVKKHGEG  60
NWNAVQKHSG LFRCGKSCRL RWANHLRPNL KKGAFTPEEE RLIVELHAKM GNKWARMAAH  120
ESQQGQSNGA LNSTDGAHHD SLQTNSYEIP DVVFDSLKGN SCVLPYVPEL PDISASGMLM  180
KGLGSSPYCG FMPPTLHRQK RPRESTALFP TSGGSFKNGF PQFDQFENDA CDKVAPSFGL  240
SFPHDPDPTA KSPLPFGVIP GSHSLSNGNS SASKPTCGAV KLELPSLQYP ETDLGSWSTS  300
PPPPLLESID NFIQSPPPVG AFESDCASPR NSGLLDALLY EAKTLSSTKN HSTDKSSNSS  360
SVTPGEVADS STLNVCETEW EEYGDPISPL GHSATSLFSE CTPISTSGSS LEEAPPAETL  420
TGSDVKLEPV DHTWTPEKEK QTSPPVDYTR PDALLGSDWL EPNTGFKDHS IMTDAIASLL  480
GEDLANDYKH MASGTSTSNQ GWGLGSCPWN NMPAVCQMSD LP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	1e-106	MYB family protein