PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro07_G33926 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | LBD | ||||||||
Protein Properties | Length: 184aa MW: 20157 Da PI: 7.6328 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 65.3 | 1.5e-20 | 51 | 108 | 1 | 58 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredam 58 +CaaCk+lrr+C++ Cvlapyfp ++p kf ++h++FGasn++k+l++ e +++++ Ro07_G33926 51 PCAACKTLRRRCVERCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQKQISELQSQLA 108 7**********************************************97666665554 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence |
MEFNGSTTTT TTTPPSSLSY SPLISSSSSS PATSPTTSAL PPLPPAVVVS PCAACKTLRR 60 RCVERCVLAP YFPPSEPLKF TIAHRVFGAS NIIKFLQKQI SELQSQLAKA QAELFNMQCQ 120 QGNLIALICM NMRSSSAPNT TQQSKEAVAP ILQQQQYLNY NIDTSCFLDE NCLGTVWDWE 180 SLWT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 3e-36 | LBD family protein |