PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G33888

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 386aa MW: 43163.3 Da PI: 6.3235

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G33888	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.4e-12	257	303	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er RR ++N++f+ Lrel+P++ +K++ a+++ A+ YI +L Ro07_G33888 257 TKHFATERYRRIQLNDKFSALRELVPNP-----TKPDRASVVGDAIGYIEEL 303 78************************.....9*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MQKTSKSTRP SKSKKPKMYV DSAAGACNFD PNNNPMSESA PEVVLNNTNN NSFAHEENLR 60 RLSMEEELSN YHHNTAMEIE QLQNEMGFGT MDQNTSNNPH LVNPFENHQA TNWDNNNEMQ 120 QQLPQVPTPD LLSLFHLPSS SVLPHSSITF TNPKSPGCFP GSFGFEALPE TPSGTAASSV 180 MYDPLFHLPP QPQPPLFREL LQSLPHGYNL GGNGSSLFNN GGDEGEDGSR QLFENGVLEF 240 SKEIKPIGRG RGGNKGTKHF ATERYRRIQL NDKFSALREL VPNPTKPDRA SVVGDAIGYI 300 EELKRTVDEL KLLVEKKRCQ RERSKRHKTE QDVGAGDDES CNTKPLIDPH EQCMKGLLCM 360 QVPLPTSSLR LWTDNMQQFH LPVVIN

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MQKTSKSTRP SKSKKPKMYV DSAAGACNFD PNNNPMSESA PEVVLNNTNN NSFAHEENLR  60
RLSMEEELSN YHHNTAMEIE QLQNEMGFGT MDQNTSNNPH LVNPFENHQA TNWDNNNEMQ  120
QQLPQVPTPD LLSLFHLPSS SVLPHSSITF TNPKSPGCFP GSFGFEALPE TPSGTAASSV  180
MYDPLFHLPP QPQPPLFREL LQSLPHGYNL GGNGSSLFNN GGDEGEDGSR QLFENGVLEF  240
SKEIKPIGRG RGGNKGTKHF ATERYRRIQL NDKFSALREL VPNPTKPDRA SVVGDAIGYI  300
EELKRTVDEL KLLVEKKRCQ RERSKRHKTE QDVGAGDDES CNTKPLIDPH EQCMKGLLCM  360
QVPLPTSSLR LWTDNMQQFH LPVVIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	1e-25	bHLH family protein