PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G33792
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HD-ZIP
Protein Properties Length: 612aa    MW: 69411.7 Da    PI: 8.6986
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G33792genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.22.9e-133083356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                  ++++  + +++Lee+  kn+yp+ +++ee+A++l L+ +qV++W qN+R++++
  Ro07_G33792 30 AKRKYDGYTIQQLEEFITKNPYPNNNQKEEMARQLLLQPKQVTYWIQNHRTRRR 83
                 567888999******999**********************************98 PP
2START99.27.7e-3220737544206
                  CEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE CS
        START  44 sgealrasgvvdmvlallveellddke...qWdetlakaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd 131
                    e++++s++v m+l + v++l+d+k+    + + + ka tlev+  g      +al+ m a++ ++splvp R+  f+Ry+rq  ++ wv+vd  + 
  Ro07_G33792 207 LPETSKDSAMVLMDLINIVKILMDVKQestMFGNIVSKARTLEVLAVGdkknfnEALHEMIAKFHLPSPLVPvREHHFIRYCRQYFEDLWVVVDADL- 303
                  5689**********************88888888888*********************************************************333. PP

                  -TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 132 seqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                   e +   + s++++ ++p g+li+ +++++skvtwve ++++    ++l+ +l++sg+a+gak wv+tl+rqce+
  Ro07_G33792 304 REIF---QDSLAKSYRRPFGCLIQALPDRYSKVTWVEDAEVDNEDAQNLYLPLIRSGVAFGAKCWVSTLERQCER 375
                  3333...4467777778********************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    
MSRQVRSFIE LMQPSNLNYE GWLGELPRSA KRKYDGYTIQ QLEEFITKNP YPNNNQKEEM  60
ARQLLLQPKQ VTYWIQNHRT RRRTEFFRIA KLHVKLKGYE QAIANTTCLV CGGPMITTKG  120
LDYRPQVPNA DPNIENGKSP LDFPEAFQQA RKDFLHTKVG NDLVANYGRA GHDGPSPLCG  180
FLRNMADIQI IIIFSTKNPN HTPTNFLPET SKDSAMVLMD LINIVKILMD VKQESTMFGN  240
IVSKARTLEV LAVGDKKNFN EALHEMIAKF HLPSPLVPVR EHHFIRYCRQ YFEDLWVVVD  300
ADLREIFQDS LAKSYRRPFG CLIQALPDRY SKVTWVEDAE VDNEDAQNLY LPLIRSGVAF  360
GAKCWVSTLE RQCERLVISM ATSHDPISLG VIYYDKGKRG LYNLARRMML KFHSDISSSA  420
ANQWSTSLEC PGSDEIQSMV KVNMEDPGVP KGTIFSTVSS LWRLTSPREV FEFLQNLQTQ  480
HPWDILAKGD VVKEIMRIIT SPNPGNYISM LRIDGANSGT SKRLILQESC VNSIESYLVY  540
TKINFFEMKA VLNGENPDSV ALLPSGFAII PNVAATKGVR GSHGTNTDET LLTIAIQKVV  600
HLGRNLKNFN KP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.11e-120HD-ZIP family protein