PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G33754
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HD-ZIP
Protein Properties Length: 677aa    MW: 76169.2 Da    PI: 8.5027
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G33754genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox413.3e-134094256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 +k++++  + +++Lee+  kn+yp+ +++ee+A++l L+ +q+++W qN+R++++
  Ro07_G33754 40 SKKRKYDGYTIQQLEEFITKNPYPNDNQKEEMARQLLLQPKQITYWIQNHRTRRR 94
                 677899999*******999**********************************98 PP
2START1457.2e-461894104206
                  HHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
        START   4 eeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                   +a++elv +a+a++p+W +++        +++n+ e+l++f+++ +     + +ea+r+s++v m++ + v++l+d+k qW++++     ka tlev
  Ro07_G33754 189 FAAMEELVMMAQAGAPLWISERhgghpnqhDILNKVEYLKIFPRNPNhtpttFCSEASRDSAMVLMDPINIVKILMDVK-QWSTMFGnivsKARTLEV 285
                  689***************************************9987799*9999*************************.******99********** PP

                  ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
        START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                  +  g      +al+ m ae+ ++splvp R+  fvRy+rq  ++ wv+vd  + +  + +  +++ R   +pSg+li+ +++g skvtwve+++++  
  Ro07_G33754 286 LAVGdkenfnEALHEMIAEFHLPSPLVPvREHHFVRYCRQYYEDLWVVVDADLKEIFQDS-LAKYYR---RPSGCLIQALPDGNSKVTWVENAEVENE 379
                  **999*********************************************5555555555.566666...9*************************** PP

                  XXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 176 lphwllrslvksglaegaktwvatlqrqcek 206
                   +++l+ +l++sg+a+gak+wv+tl+r ce+
  Ro07_G33754 380 DVQNLYLPLIRSGAAFGAKRWVSTLERECER 410
                  *****************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    
MPKEKQLQIS SWIGPSNPRS PEEDLDPSSG SDISPSRFKS KKRKYDGYTI QQLEEFITKN  60
PYPNDNQKEE MARQLLLQPK QITYWIQNHR TRRRAEFFRS ENDALKKEVA KLHVKLKGYE  120
QAFANTTCLV CGGPRITTKG LDYRPQVLDA GPNIEKGKST LDFPEAFQQA KKDFLHTKDG  180
KDLVAKLVFA AMEELVMMAQ AGAPLWISER HGGHPNQHDI LNKVEYLKIF PRNPNHTPTT  240
FCSEASRDSA MVLMDPINIV KILMDVKQWS TMFGNIVSKA RTLEVLAVGD KENFNEALHE  300
MIAEFHLPSP LVPVREHHFV RYCRQYYEDL WVVVDADLKE IFQDSLAKYY RRPSGCLIQA  360
LPDGNSKVTW VENAEVENED VQNLYLPLIR SGAAFGAKRW VSTLERECER LVGSIATSPD  420
PISLGVIYDD KGKRGLYNLA RRMMLKFHSD ISASAANQWS TSLECPGSNE IQSMVKVNME  480
DPGVPKGTIF STVSSLWHLT SPRDIFEFLQ NLQTQHPWDI LAKGEVVEEI MRIITSPNPG  540
NYISMLRIDG ANSGTSKRLI LQESCVNSIE SYLVYTKINF FEMKAVLNGA NPDSVALLPS  600
GFAIIPNVAA TKGVGGSHGT NIDGTLLTIA IQKVVHLGRN LKNFNKPLTE AKKRIRAIIA  660
GITRAALKDH QQLAGLY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1651657AKKRIRA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.11e-170HD-ZIP family protein