PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G33745

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 519aa MW: 58233.2 Da PI: 6.513

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G33745	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.5	1.2e-13	356	401	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+E++RR+++N++f Lr+++P+ K++Ka+ L AveYI++L Ro07_G33745 356 NHVEAEKQRREKLNNRFYALRSVVPNV-----SKMDKASLLADAVEYINDL 401 799*********************6.....5**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence
MDEIISSCFS PYIVCPETSP TLLQQRLQFI LQNRHESWVY SIFWKASKAS NDDDLSLSWA 60 GGHFRGTRDF SSKRSSIHKV DNNYQPEFGF DPKKGMISRG IEALFHDDMD LERFVDTNGD 120 VTDSEWFYFY TVSLIQSFAA GQNRNSNILG SVYSSGGFIW LAGDDDFQLY ECDRVKEARM 180 HEIRTLVCVA TSRGVLELAS LDVIKEDWSF VQHAKSLFGI SDSTSEQGSH EAHVHVPQHA 240 KSLFGISDST SDQGSHEAHV HVPQHAKSLF GISDSTSEQG SHEAHVHVPL LQNGLMLSAA 300 QKEWTTLGRG MKELAFNIDG SSSDLGLSEN IENIRSKKRG RSSRHVNGGR ESPSLNHVEA 360 EKQRREKLNN RFYALRSVVP NVSKMDKASL LADAVEYIND LKTKVEELEA RVRRQTNRAI 420 VGSTSSISSR AAVAAMEVDV KFLGSDAMIR VQCRDNDDYP YARLMNALKD LELQIYHASI 480 SSVKEVMLQN IVARVPIGFT SEEAMRTAIV KRLNYNLIN

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence

MDEIISSCFS PYIVCPETSP TLLQQRLQFI LQNRHESWVY SIFWKASKAS NDDDLSLSWA  60
GGHFRGTRDF SSKRSSIHKV DNNYQPEFGF DPKKGMISRG IEALFHDDMD LERFVDTNGD  120
VTDSEWFYFY TVSLIQSFAA GQNRNSNILG SVYSSGGFIW LAGDDDFQLY ECDRVKEARM  180
HEIRTLVCVA TSRGVLELAS LDVIKEDWSF VQHAKSLFGI SDSTSEQGSH EAHVHVPQHA  240
KSLFGISDST SDQGSHEAHV HVPQHAKSLF GISDSTSEQG SHEAHVHVPL LQNGLMLSAA  300
QKEWTTLGRG MKELAFNIDG SSSDLGLSEN IENIRSKKRG RSSRHVNGGR ESPSLNHVEA  360
EKQRREKLNN RFYALRSVVP NVSKMDKASL LADAVEYIND LKTKVEELEA RVRRQTNRAI  420
VGSTSSISSR AAVAAMEVDV KFLGSDAMIR VQCRDNDDYP YARLMNALKD LELQIYHASI  480
SSVKEVMLQN IVARVPIGFT SEEAMRTAIV KRLNYNLIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17880.1	7e-73	bHLH family protein