PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G33618

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HD-ZIP

Protein Properties

Length: 545aa MW: 61075 Da PI: 8.1901

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G33618	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	41.4	2.5e-13	54	108	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k++++ + +++Lee+ kn+yp+ +++ee+A++l L+ +q+++W qN+R++++ Ro07_G33618 54 SKKRKYDGYTIQQLEEFITKNPYPNDNQKEEMARQLLLQPKQITYWIQNHRTRRR 108 677899999*****999********************************98 PP
2	START	21.9	3.6e-08	169	234	50	106
EEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX CS START 50 asgvvdmvlallveellddkeqWdetla....kaetlevissg......galqlmvaelqalsplvp 106 ++++v m++ + v++l+d+k qW++++ ka tlev+ g +al+ m ae+ ++splvp Ro07_G33618 169 EKAMVLMDPINIVKILMDVK-QWSTMFGnivsKARTLEVLAVGdkenfnEALHEMIAEFHLPSPLVP 234 578999************.**99********999*******************99 PP
3	START	28.1	4.5e-10	236	277	164	205
EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 +twve+++++ +++l+ +l++sg+a+gak+wv+tl+rqce Ro07_G33618 236 LTWVENAEVDNEDVQNLYLPLIRSGAAFGAKRWVSTLERQCE 277 79***************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MSRQVRSFDE LIKPSNLDYE VANFSWIGPS NPRSPEEDLD PSSGSDISPS RFKSKKRKYD 60 GYTIQQLEEF ITKNPYPNDN QKEEMARQLL LQPKQITYWI QNHRTRRRAE FFRSENDALK 120 KEVAKLHVKL KGYEQAFANT TCLVCGGPRI TTKGLDYRPQ VLDAGPNIEK AMVLMDPINI 180 VKILMDVKQW STMFGNIVSK ARTLEVLAVG DKENFNEALH EMIAEFHLPS PLVPVLTWVE 240 NAEVDNEDVQ NLYLPLIRSG AAFGAKRWVS TLERQCEQLV SSMATSPDPI SLGVIYDDKG 300 KRGLYNLARR MMLKFHSDIS ASAANQWSTS LECPGSDEIQ SMVKVNMEDP GVPKGTIFST 360 VSSLWRLTSP TDIFEFLQNL QTQHPWDILA KGEVVEEIMR IITSPNPGNY ISMLRIDGAN 420 SGTSKRLILQ ESCVNSIESY LVYTKINFFE MKAVLNGANP DSVALLPSGF AIIPNVAATK 480 GVGGSHGTNI DGTLLTIAIQ KVVHLGRNLK NFNKPLTEAK KRIRAIIAGI TRAALKDHQQ 540 LAELY

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MSRQVRSFDE LIKPSNLDYE VANFSWIGPS NPRSPEEDLD PSSGSDISPS RFKSKKRKYD  60
GYTIQQLEEF ITKNPYPNDN QKEEMARQLL LQPKQITYWI QNHRTRRRAE FFRSENDALK  120
KEVAKLHVKL KGYEQAFANT TCLVCGGPRI TTKGLDYRPQ VLDAGPNIEK AMVLMDPINI  180
VKILMDVKQW STMFGNIVSK ARTLEVLAVG DKENFNEALH EMIAEFHLPS PLVPVLTWVE  240
NAEVDNEDVQ NLYLPLIRSG AAFGAKRWVS TLERQCEQLV SSMATSPDPI SLGVIYDDKG  300
KRGLYNLARR MMLKFHSDIS ASAANQWSTS LECPGSDEIQ SMVKVNMEDP GVPKGTIFST  360
VSSLWRLTSP TDIFEFLQNL QTQHPWDILA KGEVVEEIMR IITSPNPGNY ISMLRIDGAN  420
SGTSKRLILQ ESCVNSIESY LVYTKINFFE MKAVLNGANP DSVALLPSGF AIIPNVAATK  480
GVGGSHGTNI DGTLLTIAIQ KVVHLGRNLK NFNKPLTEAK KRIRAIIAGI TRAALKDHQQ  540
LAELY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	519	525	AKKRIRA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	8e-96	HD-ZIP family protein