PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G33475

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WRKY

Protein Properties

Length: 1059aa MW: 119779 Da PI: 4.6768

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G33475	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	28.3	3.4e-09	667	722	2	58
--SS-E...EEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynW...rKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 dDg++W rKY +s+ rs Y C++ +C++k k+ s +dp+++ itY g+H++ Ro07_G33475 667 DDGFSWgrtRKY-----PESTEVRSEYYCSYGpSCWAKSKLRISVDDPTILYITYIGRHTC 722 899999444444.....68999999999*98************************98 PP
2	WRKY	57.1	3.6e-18	745	804	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 Dg++W KYGq + +++pr Y Ct + gC++ k+v+rs++dp++++itY+g+H+++ Ro07_G33475 745 DGFSWGKYGQMDLPRAKYPRVCYVCTPQnvrGCMAIKEVQRSNDDPTILKITYRGRHTCT 804 9***********************988889************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1059 aa Download sequence
MQPAKKLINI DLSCSKYFNK IPDLSEATNL EKLILQGCTS LLEVHPSISA LENLVILNLE 60 RCSELKMLPS SIHLKSLRLL YLGDCSKLEM FPEISEDMEA LSELQLYGTA IQELPSSIER 120 LRRLESLRME NCTSLVCLPD SICNLAELRF LDLSGCSNLD KFPEISVDME ALLELRLDET 180 AIEELPSSIE RLRRLASLSM QNCTSLVCLP NSICNLAELR FLNLEGCSKL QYLPENFGSL 240 ESLLDIQVNE SGLEQLPVSI LRLKLGRLSF NNCEQMVAPL SSWPSSIEDC CTVVVHLDFT 300 DCNLLSRNNL ESLPLIMNRL VCLEQLELEG CKRLKSIPEL SSSISYINAD DCIALETVLT 360 PKHPYDMGRC FTFCNCSKLV QNDLFRDIVE THSPPQGNYS QPFYMCFPGS EMPERFAHQC 420 RGSSVTAQLP PNWFDNKFLG FAICAVTNNY KQAIDYDELS VRCFCTFKGD QCEYRFSFYL 480 FHRDFDHDDF RWLESNHMFL GYVPWSEFGI NGEEVNERCY TEAKFEIQLL HFEGSPYYAD 540 LRESFHPSIE RCDPCIERCG VQFFFANNEE VDHQDFVEPM AHSEEGCSAE LSGSASRSDT 600 SDVDEQYLKL SELFGGSSIN SIGSYYIESD ESDCEIEDND SSGKRKILSR WTQQVRVTSG 660 LMQGLLDDGF SWGRTRKYPE STEVRSEYYC SYGPSCWAKS KLRISVDDPT ILYITYIGRH 720 TCWETLPMLT HRVRITPGML EGPFDGFSWG KYGQMDLPRA KYPRVCYVCT PQNVRGCMAI 780 KEVQRSNDDP TILKITYRGR HTCTQASTSS IGGRSDGRIS RGYDAKILSR WTQQVRVTSG 840 LMQGTEYDCT DQPSSWAKSK LRISIDDPTI LDITYIGRHT CWKTLPMLTH QSVTCALLKM 900 KCNAPITIQE SLKLLTEEGT HVYKPTPSAL RERISEGGGA LRIHDQVVQS PRSLGDNGSG 960 GNVIRQADRA MDDSNVNMLP DANSQDMEHS QDVNHMADKI MAGYPNHGGV VSEGTSDAVV 1020 NQSDEEDPMD FNNLKKRKRE MDSDDDQPTE SNSISNNNP

Sequence ? help Back to Top

Protein Sequence Length: 1059 aa Download sequence

MQPAKKLINI DLSCSKYFNK IPDLSEATNL EKLILQGCTS LLEVHPSISA LENLVILNLE  60
RCSELKMLPS SIHLKSLRLL YLGDCSKLEM FPEISEDMEA LSELQLYGTA IQELPSSIER  120
LRRLESLRME NCTSLVCLPD SICNLAELRF LDLSGCSNLD KFPEISVDME ALLELRLDET  180
AIEELPSSIE RLRRLASLSM QNCTSLVCLP NSICNLAELR FLNLEGCSKL QYLPENFGSL  240
ESLLDIQVNE SGLEQLPVSI LRLKLGRLSF NNCEQMVAPL SSWPSSIEDC CTVVVHLDFT  300
DCNLLSRNNL ESLPLIMNRL VCLEQLELEG CKRLKSIPEL SSSISYINAD DCIALETVLT  360
PKHPYDMGRC FTFCNCSKLV QNDLFRDIVE THSPPQGNYS QPFYMCFPGS EMPERFAHQC  420
RGSSVTAQLP PNWFDNKFLG FAICAVTNNY KQAIDYDELS VRCFCTFKGD QCEYRFSFYL  480
FHRDFDHDDF RWLESNHMFL GYVPWSEFGI NGEEVNERCY TEAKFEIQLL HFEGSPYYAD  540
LRESFHPSIE RCDPCIERCG VQFFFANNEE VDHQDFVEPM AHSEEGCSAE LSGSASRSDT  600
SDVDEQYLKL SELFGGSSIN SIGSYYIESD ESDCEIEDND SSGKRKILSR WTQQVRVTSG  660
LMQGLLDDGF SWGRTRKYPE STEVRSEYYC SYGPSCWAKS KLRISVDDPT ILYITYIGRH  720
TCWETLPMLT HRVRITPGML EGPFDGFSWG KYGQMDLPRA KYPRVCYVCT PQNVRGCMAI  780
KEVQRSNDDP TILKITYRGR HTCTQASTSS IGGRSDGRIS RGYDAKILSR WTQQVRVTSG  840
LMQGTEYDCT DQPSSWAKSK LRISIDDPTI LDITYIGRHT CWKTLPMLTH QSVTCALLKM  900
KCNAPITIQE SLKLLTEEGT HVYKPTPSAL RERISEGGGA LRIHDQVVQS PRSLGDNGSG  960
GNVIRQADRA MDDSNVNMLP DANSQDMEHS QDVNHMADKI MAGYPNHGGV VSEGTSDAVV  1020
NQSDEEDPMD FNNLKKRKRE MDSDDDQPTE SNSISNNNP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12020.1	6e-28	WRKY family protein