PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G33472

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WRKY

Protein Properties

Length: 394aa MW: 44060.6 Da PI: 4.5113

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G33472	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	26.4	1.4e-08	110	165	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDg++W + + + + rs Y C +++C +k k s++dp+++eitY g+H++ Ro07_G33472 110 DDGFSWNSNEWSDLR-NGYFRSKYSCKQTSCYAKSKKIVSSSDPTILEITYIGRHTC 165 666666666555555.45679*********9955555555***********98 PP
2	WRKY	69.5	4.8e-22	189	247	3	58
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 Dg++WrKYGqK+ g ++pr+YY C + gC++ k+v+ s++dpk+++itY+g+H++ Ro07_G33472 189 DGFSWRKYGQKDFLGVKYPRAYYICIPQnvrGCMAIKEVQLSDDDPKILKITYRGRHTC 247 9**********************8776779***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MDSLASIKWC GVRFFFANNE EVSHQDFGEP MVHSERSLEG CSAEPITNDE DEQYLKLSEL 60 FDGANRNSRE YDSESDCEIE DDDSSGKRKI LSRWTQHVRV TSALMQGLLD DGFSWNSNEW 120 SDLRNGYFRS KYSCKQTSCY AKSKKIVSSS DPTILEITYI GRHTCWKTQP MLTDQVRVKP 180 GMGPEGPFDG FSWRKYGQKD FLGVKYPRAY YICIPQNVRG CMAIKEVQLS DDDPKILKIT 240 YRGRHTCIQA STICIGGRGD GRISEGRGAL RIHDQVGDNG SGGNVIRLAD RTMDGNNANI 300 LPDANSQDME HFQDVNYMAN EDVAGYPNYG GVVCEGTSEA VVNQLEEEDS MDVNHMANKD 360 VAGYPNHGGV VSEGSSDAMV NQLEEEDPMD FNSL

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MDSLASIKWC GVRFFFANNE EVSHQDFGEP MVHSERSLEG CSAEPITNDE DEQYLKLSEL  60
FDGANRNSRE YDSESDCEIE DDDSSGKRKI LSRWTQHVRV TSALMQGLLD DGFSWNSNEW  120
SDLRNGYFRS KYSCKQTSCY AKSKKIVSSS DPTILEITYI GRHTCWKTQP MLTDQVRVKP  180
GMGPEGPFDG FSWRKYGQKD FLGVKYPRAY YICIPQNVRG CMAIKEVQLS DDDPKILKIT  240
YRGRHTCIQA STICIGGRGD GRISEGRGAL RIHDQVGDNG SGGNVIRLAD RTMDGNNANI  300
LPDANSQDME HFQDVNYMAN EDVAGYPNYG GVVCEGTSEA VVNQLEEEDS MDVNHMANKD  360
VAGYPNHGGV VSEGSSDAMV NQLEEEDPMD FNSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11070.2	6e-27	WRKY family protein