PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G33471
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family WRKY
Protein Properties Length: 281aa    MW: 31792.8 Da    PI: 4.6397
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G33471genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY27.46.6e-0951931758
                 T-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY 17 gsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58
                 g+ + r  Y Ct + +C++k k+  s +dp++++itY g+H++
  Ro07_G33471 51 GTGYYRTEYDCTDQpSCWAKSKLRISIDDPTILDITYIGRHTC 93
                 5667788899**999**************************98 PP
2WRKY55.51.2e-17117176359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  Dg++W +YGq +   +++pr YY C  +   gC++ k+v+ s++dp++++itY+g+H+++
  Ro07_G33471 117 DGFSWGRYGQMDLPAAKYPRVYYVCIPQnvrGCMAIKEVQLSDDDPTILKITYRGRHTCT 176
                  9************************8776779**************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    
MNSVAIYKNF DGRCREILSR WTQQVRVTSG LMQGDLNDGF SWTRTVWSDL GTGYYRTEYD  60
CTDQPSCWAK SKLRISIDDP TILDITYIGR HTCWESLPML THQVRVTPGM ELEGPFDGFS  120
WGRYGQMDLP AAKYPRVYYV CIPQNVRGCM AIKEVQLSDD DPTILKITYR GRHTCTQAST  180
ITLSEENGER LIGANQGPST TTDPKILSWD GNSLGSVKQI SEGVDDIIPF QAEWNPIGYI  240
IEKKAKDDAE LITHIATNVE SIMVELSNSK DIYLNVEAFY D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-25WRKY family protein