PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G33251

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 1516aa MW: 172123 Da PI: 4.6985

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G33251	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	135.1	4.6e-42	8	135	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lp+GfrFhPt+eelv+++Lkkk++gk+++ +i+e+di+k+ePwdLp + ++++++ew++Fs+ d k ++ kr+nrat++g+Wk t +++e++++ Ro07_G33251 8 LPVGFRFHPTEEELVNHFLKKKMQGKDFDD--IIPEIDILKWEPWDLPglSPIQSDDDEWFYFSRPDYKFNNRKRANRATERGFWKITSRENEIIARq 103 79***********************766..8***********6447888999*******************************99985 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyr 127 +++++g k+tL+fy+g+ ++g+kt+Wv+hey Ro07_G33251 104 SKAVIGKKRTLTFYTGKVRSGKKTSWVIHEYY 135 66679************************7 PP
2	NAM	103	3.8e-32	449	562	4	128
NAM 4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelv 100 G FhPtdeelv++yLk+k++g++ e++ +i+e+d ++++ +fF+k++ ky++++r+nr tk+gyWk tgk++e++++ +++++ Ro07_G33251 449 GKWFHPTDEELVNYYLKQKMQGNDSEINGTIPEIDTEA------------HDEDRFFFTKKHYKYHNSDRSNRCTKEGYWKITGKEREIKDRrSKAVI 534 778*******************99988899988644............45788*******************************99566679 PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g kktL+fy+grap+++kt Wv+hey+l Ro07_G33251 535 GKKKTLTFYQGRAPNSKKTGWVIHEYSL 562 ************************97 PP
3	NAM	84.1	2.7e-26	904	1037	11	127
NAM 11 deelvveyLkkkvegkkleleevikevdiykvePwdLpk..............kvka....eekewyfFskrdkkyatgkrknratksgyWkatgk 88 + el+ +L+kk +gk+ ++ ++i+ ++++++eP +Lp+ + + +w+fFs+rd +++++r +r+t++g+Wk++g Ro07_G33251 904 NPELL-SHLEKKNQGKDSQVIDIIPVIQVCEHEPPELPElvltrgkfrerewfT--MpddpLDMQWHFFSPRDFISSKSTRVKRKTQQGFWKKQGD 996 66888.89**********99************6688888777666542..133334559*************************** PP NAM 89 dkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyr 127 d+ + ++ +++++g k+tL+fy+ + k++ktdWv+hey Ro07_G33251 997 DRIIRARgSKAEIGRKRTLTFYQRrGETKPKKTDWVIHEYY 1037 *9966677******762567889******95 PP

Sequence ? help Back to Top
Protein Sequence Length: 1516 aa Download sequence
MAMSAAALPV GFRFHPTEEE LVNHFLKKKM QGKDFDDIIP EIDILKWEPW DLPGLSPIQS 60 DDDEWFYFSR PDYKFNNRKR ANRATERGFW KITSRENEII ARQSKAVIGK KRTLTFYTGK 120 VRSGKKTSWV IHEYYIPETL LPNNATQRDF VLCRLKKKDE RTDNGACDEG EPSTNNTSDF 180 ENLFSEDLEI VLRENSGPED FGTLFTPPES PHFSSMMREG FLNANAGSDR HLVLEAAFGD 240 DESEVFVNSC LVDEDGYHLE ERSRTTLLHH SSEPKSLSRV YVEDAHKQVM SSPVASSLVK 300 TGQAQLQSGP RVQLRVDDFI AHRKVRTETG QSSVPYPIRI SKPLKVKYTS KVPEKPKAPV 360 PAPMEAPVRP PMARQREQGQ SLEPPSNDEQ KGVKQKQTGT TFSDWKGSFI VWKESPLSLK 420 SYPPVVYISY MILGLFLFIS FAGEVVSYGK WFHPTDEELV NYYLKQKMQG NDSEINGTIP 480 EIDTEAHDED RFFFTKKHYK YHNSDRSNRC TKEGYWKITG KEREIKDRRS KAVIGKKKTL 540 TFYQGRAPNS KKTGWVIHEY SLPGKGDFVI CRLKYKSDNK DSSIYDEGQP SSSHVMFNCE 600 NQAADVMIQE AQENGESLLY PPPPLDDCCS SALQSPTTLE LGDVLQANGT NDDCNELQSP 660 FGDSDSCAHD KNEVSTRDED ETMYDVYPEN IIPTIDNNEP VNYIASKLEN QLCDPPEKNL 720 DSLFRPFQPQ DYNSSTLQSP IYTLQSPIYT LQLPIYTLQS PICTERGNVP HPLQPQDHQP 780 TILQSPIYTN LDNVPHADVY YGECNKWQSA FKKTISTNEV DIPVRHIMSN FENQAADYSI 840 LEVRMVYPQT EGNLESSFYP FQPQDSTLQP LMYTNFGDAL HNIECNELQS RVYHGDSGVS 900 NVTNPELLSH LEKKNQGKDS QVIDIIPVIQ VCEHEPPELP ELVLTRGKFR EREWFTMPDD 960 PLDMQWHFFS PRDFISSKST RVKRKTQQGF WKKQGDDRII RARGSKAEIG RKRTLTFYQR 1020 RGETKPKKTD WVIHEYYRTA KGEQIGDFVL CRLKNKSDKS DSEQHASICD EAEPASGSCS 1080 MTSHVEIQAA AKGMIREAEE NQLASKELGN VSNGNDDEAE PCSPPSALEI QAASNGMITA 1140 AEEFLTYKEL GDAVQNPNGN EDVFNGWQTG SYLIDKLLYS HFPQPQPPQP HQVPQPYPPQ 1200 VYCPSTLQSP ISTELGNVSH GTDVHNEECR KRKYPFGDND PSLMMKKNIS INDDNDEEVS 1260 NTASNSDNQV TDGNLEGDFV ICRMKNKSDK KDSSICDEGQ PSCSHVVSNC ENQAADDMIQ 1320 EAQENGESLL HPPPPLDDCC SLALQSPTSL ELEDVLQANG TNDDCNDLQS PFLDNDSCIH 1380 DKNEDEIVYD MFLELCDLPE VNLDPLIRPF QQQDYTSSIP QSPIYTNLEN VPQANVYNGE 1440 CNNWQSAFMR NISTNEVDIP VGHITSNFEN QATDYRILEV HPQTDRNLES SFYSFQPQDS 1500 TLQPLIDIQN TWRCST

Sequence ? help Back to Top

Protein Sequence Length: 1516 aa Download sequence

MAMSAAALPV GFRFHPTEEE LVNHFLKKKM QGKDFDDIIP EIDILKWEPW DLPGLSPIQS  60
DDDEWFYFSR PDYKFNNRKR ANRATERGFW KITSRENEII ARQSKAVIGK KRTLTFYTGK  120
VRSGKKTSWV IHEYYIPETL LPNNATQRDF VLCRLKKKDE RTDNGACDEG EPSTNNTSDF  180
ENLFSEDLEI VLRENSGPED FGTLFTPPES PHFSSMMREG FLNANAGSDR HLVLEAAFGD  240
DESEVFVNSC LVDEDGYHLE ERSRTTLLHH SSEPKSLSRV YVEDAHKQVM SSPVASSLVK  300
TGQAQLQSGP RVQLRVDDFI AHRKVRTETG QSSVPYPIRI SKPLKVKYTS KVPEKPKAPV  360
PAPMEAPVRP PMARQREQGQ SLEPPSNDEQ KGVKQKQTGT TFSDWKGSFI VWKESPLSLK  420
SYPPVVYISY MILGLFLFIS FAGEVVSYGK WFHPTDEELV NYYLKQKMQG NDSEINGTIP  480
EIDTEAHDED RFFFTKKHYK YHNSDRSNRC TKEGYWKITG KEREIKDRRS KAVIGKKKTL  540
TFYQGRAPNS KKTGWVIHEY SLPGKGDFVI CRLKYKSDNK DSSIYDEGQP SSSHVMFNCE  600
NQAADVMIQE AQENGESLLY PPPPLDDCCS SALQSPTTLE LGDVLQANGT NDDCNELQSP  660
FGDSDSCAHD KNEVSTRDED ETMYDVYPEN IIPTIDNNEP VNYIASKLEN QLCDPPEKNL  720
DSLFRPFQPQ DYNSSTLQSP IYTLQSPIYT LQLPIYTLQS PICTERGNVP HPLQPQDHQP  780
TILQSPIYTN LDNVPHADVY YGECNKWQSA FKKTISTNEV DIPVRHIMSN FENQAADYSI  840
LEVRMVYPQT EGNLESSFYP FQPQDSTLQP LMYTNFGDAL HNIECNELQS RVYHGDSGVS  900
NVTNPELLSH LEKKNQGKDS QVIDIIPVIQ VCEHEPPELP ELVLTRGKFR EREWFTMPDD  960
PLDMQWHFFS PRDFISSKST RVKRKTQQGF WKKQGDDRII RARGSKAEIG RKRTLTFYQR  1020
RGETKPKKTD WVIHEYYRTA KGEQIGDFVL CRLKNKSDKS DSEQHASICD EAEPASGSCS  1080
MTSHVEIQAA AKGMIREAEE NQLASKELGN VSNGNDDEAE PCSPPSALEI QAASNGMITA  1140
AEEFLTYKEL GDAVQNPNGN EDVFNGWQTG SYLIDKLLYS HFPQPQPPQP HQVPQPYPPQ  1200
VYCPSTLQSP ISTELGNVSH GTDVHNEECR KRKYPFGDND PSLMMKKNIS INDDNDEEVS  1260
NTASNSDNQV TDGNLEGDFV ICRMKNKSDK KDSSICDEGQ PSCSHVVSNC ENQAADDMIQ  1320
EAQENGESLL HPPPPLDDCC SLALQSPTSL ELEDVLQANG TNDDCNDLQS PFLDNDSCIH  1380
DKNEDEIVYD MFLELCDLPE VNLDPLIRPF QQQDYTSSIP QSPIYTNLEN VPQANVYNGE  1440
CNNWQSAFMR NISTNEVDIP VGHITSNFEN QATDYRILEV HPQTDRNLES SFYSFQPQDS  1500
TLQPLIDIQN TWRCST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33060.1	2e-45	NAC family protein