PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G27174

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

LBD

Protein Properties

Length: 266aa MW: 29136.1 Da PI: 7.0979

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G27174	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.7	7.2e-42	97	196	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+C++ Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da++s+vyeA+ar+rdPvyG++g i +lq+q+++l+++la+++ Ro07_G27174 97 PCAACKTLRRRCVERCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQDLPESQRADAVNSMVYEANARLRDPVYGCAGAICSLQKQISELQSQLAKAQ 194 7***********************************************************************************************99 PP DUF260 99 ee 100 +e Ro07_G27174 195 AE 196 87 PP

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence
FETTPSSVQT RDLSIYRFIL ITSFSILTRA TQLNSSILRT QTMEFNGSTT TTTTTTTTPP 60 SSLSYSPLIS SSSSSSPATS PTTSAPPSLP PAVVVSPCAA CKTLRRRCVE RCVLAPYFPP 120 SEPLKFTIAH RVFGASNIIK FLQDLPESQR ADAVNSMVYE ANARLRDPVY GCAGAICSLQ 180 KQISELQSQL AKAQAELLNM QCQQGNLIAL ICMEMRSAAP NTTQQSKEAV APILQQQQHL 240 NYNIDTSCFL DENYLSTVCD WESLWT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	7e-70	LBD family protein