PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro07_G27173 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | LBD | ||||||||
Protein Properties | Length: 218aa MW: 23631.1 Da PI: 6.3487 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.4 | 7.5e-41 | 48 | 147 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+C+++Cv+apyfp ++p kf +++++FGasn++kll++lp++++ da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+++la+++ Ro07_G27173 48 PCAACKTLRRRCVEKCVFAPYFPPTDPIKFTIAQRVFGASNIIKLLQDLPKSQKADAVSSMVYEASARLRDPVYGCAGAICSLQKQISELQSQLAKAQ 145 7***********************************************************************************************99 PP DUF260 99 ee 100 +e Ro07_G27173 146 AE 147 87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence |
MEFNGSTATT TTTPPSSLSY SPLISSSPAT SPTTSAPPPL PPAVVVSPCA ACKTLRRRCV 60 EKCVFAPYFP PTDPIKFTIA QRVFGASNII KLLQDLPKSQ KADAVSSMVY EASARLRDPV 120 YGCAGAICSL QKQISELQSQ LAKAQAELLN MQCQQGNLIA LNCMEIMRSA APNTTQQFKE 180 AVAPILQQQQ YLNYNIDTSC FLDENCLGTA SDWEPLWT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 9e-65 | LBD family protein |