PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G26287
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family Nin-like
Protein Properties Length: 397aa    MW: 45305.1 Da    PI: 4.934
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G26287genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK70.81.9e-22306355352
       RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  ++++ledl+ yF+l+i++A+ +L  c+Tv+K+iCR++G++RWP Rkiks+
  Ro07_G26287 306 AKMKLEDLRVYFHLTIEEASEQLRFCPTVVKKICRKFGVSRWPGRKIKSI 355
                  7899********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    
MADIPWGVVP YHDPYDHEVP DVLSFMNDST DPNLENIPAL FDQVLVPSSP HPAIPLFDNG  60
IQDLNNPIPI NAPMRDLGNN TLSNNGGGGG NTAISLVDHP SLFFGEGGES SFDQNQNYPG  120
GFGNNVMPLL PIWPPPAPIP YSCCGCQVLR EIVHFNSNYF IRLEIHGKLG VICHAIQERR  180
ANVFYNSRAS SEPHYQTFDF RTKSIEEVKH FLTQYCVERK VEGYLMQQDP MQAFYQTLCV  240
GMEEWDDILS YPDEFIPEED FDTEDFTPPD SEKADEIEQQ PVDEASGNRK GKRPRLPLAE  300
QRKRAAKMKL EDLRVYFHLT IEEASEQLRF CPTVVKKICR KFGVSRWPGR KIKSIERQVS  360
SLRPLLLSYC ESTRAHIAAE IKRLEKEIAQ LSRYEWN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.16e-13Nin-like family protein