PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G25727
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 164aa    MW: 17722.6 Da    PI: 10.3616
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G25727genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.8e-1876125255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   ++GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  Ro07_G25727  76 TFRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAARAIKG 125
                  59****998.**********843...6***********************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    
MAKKINIESD AQAASPSTST TTTLDSVIDK NTESSENYTA QKDPSSKGQE PNNGSNEPNT  60
KKRQRSSSSD GGKHPTFRGV RMRSWGKWVS EIREPRKKSR IWLGTYPTAE MAARAHDVAA  120
RAIKGASAYL NFPELAQTLP QPASASPKDI QAAAAKAASA FEEK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-32ERF family protein