PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G25428

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MIKC_MADS

Protein Properties

Length: 251aa MW: 28911.1 Da PI: 9.6281

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G25428	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	51.5	1.3e-16	4	45	10	51
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +v + +R ++lKKA+ELS LC aevavi fs++g+l+eyss Ro07_G25428 4 TVNLRRRHGTLLKKASELSELCIAEVAVIAFSPDGQLHEYSS 45 6778899999******************************96 PP
2	K-box	19.9	3.1e-08	81	151	22	92
K-box 22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 + L+++ L e+ +++G++Le+Lsl eL L +q k+l + +kK e+l+++++++ +e++++e+ + Ro07_G25428 81 QELQDKHAALCLEKLQRKGKQLERLSLVELSALLEQQTKGLLAVQNKKVEVLKDKLQQSISREEQTKEKLQ 151 468888889999999*********************************************99999988755 PP

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence
MPKTVNLRRR HGTLLKKASE LSELCIAEVA VIAFSPDGQL HEYSSTSMEH TLERYKNKVG 60 LVLPSKAVSP PEECRQEPAE QELQDKHAAL CLEKLQRKGK QLERLSLVEL SALLEQQTKG 120 LLAVQNKKVE VLKDKLQQSI SREEQTKEKL QRSMSREEQT MQENEILRRR FEGFMVGQNY 180 KPLNLIPRHP ATWDRNYGNR MGFCTSSRAA VSVSNYPSDQ KDDHLNMTTL RLGPSYTRTK 240 QTDIYHLKLS Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13790.1	4e-20	MIKC_MADS family protein