PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G24639

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Trihelix

Protein Properties

Length: 432aa MW: 49385.5 Da PI: 6.2078

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G24639	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	96.2	2.9e-30	119	204	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+Ckek+enl k+ykk+k+g+ +r ++ +++++f+qlea Ro07_G24639 119 RWPRQETLTLLEIRSSLDSKFKETNQKGPLWDEVSRIMsEEHGYQRSGKKCKEKFENLYKYYKKTKDGKAGR--QDGKHYRFFRQLEA 204 8***********************************999*************************98..55667*****85 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence
MDDYPDLELR QLMASRTQPF GTTLQFPDPF SVRPYNNYHP TSIVVGHEVN SHGLVEVNSH 60 GLVEFGSAAA PSFSSIISNS SAAGNLNAAS SVGSLYGLEL MDQHGWNLNG NDGSGNNSRW 120 PRQETLTLLE IRSSLDSKFK ETNQKGPLWD EVSRIMSEEH GYQRSGKKCK EKFENLYKYY 180 KKTKDGKAGR QDGKHYRFFR QLEAIYGDQS TTNQLSSASD QTHQTGTLNP TLLYNHITAT 240 INQENQEVKL GAESLSFSNN STEFETSTSE NNGDDLSNSA NDHFKNEKQR RVKKSWKAKV 300 EEFVNSQMRK VMMTQEGWME KMLKTIEDRE DERLAKEKEW RKQEAERFNQ QVHEFWAKER 360 AWVETRDASI MEALSQIRGV GTNSYHKDKD ENMGLHLMDG SLLPSSSNYM NMNSNSFYIP 420 INEGDNLWNR YG

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence

MDDYPDLELR QLMASRTQPF GTTLQFPDPF SVRPYNNYHP TSIVVGHEVN SHGLVEVNSH  60
GLVEFGSAAA PSFSSIISNS SAAGNLNAAS SVGSLYGLEL MDQHGWNLNG NDGSGNNSRW  120
PRQETLTLLE IRSSLDSKFK ETNQKGPLWD EVSRIMSEEH GYQRSGKKCK EKFENLYKYY  180
KKTKDGKAGR QDGKHYRFFR QLEAIYGDQS TTNQLSSASD QTHQTGTLNP TLLYNHITAT  240
INQENQEVKL GAESLSFSNN STEFETSTSE NNGDDLSNSA NDHFKNEKQR RVKKSWKAKV  300
EEFVNSQMRK VMMTQEGWME KMLKTIEDRE DERLAKEKEW RKQEAERFNQ QVHEFWAKER  360
AWVETRDASI MEALSQIRGV GTNSYHKDKD ENMGLHLMDG SLLPSSSNYM NMNSNSFYIP  420
INEGDNLWNR YG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-82	Trihelix family protein