PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G23933
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 320aa    MW: 34653.1 Da    PI: 6.5109
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G23933genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.5e-182474256
          AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                 ++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a++ a++ l+g+
  Ro07_G23933 24 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDDAARTLRGA 74
                 689******.7*********....4456*************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MGGVRPQNDG VRGRRKSSSR GHHRFVGVRQ RPSGRWVAEI KDSLQKVRLW LGTFDTAEDA  60
ARAYDDAART LRGANARTNF ELPQSKNNRA GMGGSDGLEN VEPFSFEDVC GNGDAADGLL  120
GALKAKLLDG NGLSRVHEKI ESSSPRGGGV EFANPPMQQG SGSTKEKNIS YNWCIQPPSH  180
KNDHHDFVFD IRDQSEAAVA GHVASNPNPA MVWTNESPGY EGTWSNTFSM PTWPVTTETI  240
VNMAYTDQCS MELSTTSRDH AKVTAIRATQ QLSPIEGAMG GGAWSAEQQY LHCDNNWAAA  300
ANGAWDSHGL FYPSSVSGVI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-17ERF family protein