PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G23853

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MIKC_MADS

Protein Properties

Length: 268aa MW: 30504.9 Da PI: 9.7577

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G23853	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.2	9e-28	13	63	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien+ rqvtfskRr+g+lKKA+EL +LCdaevavi+fs+tgkl+e+ss Ro07_G23853 13 KKIENTNSRQVTFSKRRAGLLKKAQELAILCDAEVAVIVFSNTGKLFEFSS 63 68***********************************************96 PP
2	K-box	64	5.7e-22	85	165	9	89
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 e++ +++ e++ Lk+e+e+Lq++q +llG+dL+sLslkeLq+Le++L ++l ++++kK++ll+eq+e+++ k +el++ Ro07_G23853 85 EESRAEKEEPMEVDVLKDELEKLQKKQLRLLGNDLSSLSLKELQKLENELTEGLFSVKEKKDKLLMEQLEQSRVKVEELRR 165 34445566779*****************************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence
MKKKMGRGKI EIKKIENTNS RQVTFSKRRA GLLKKAQELA ILCDAEVAVI VFSNTGKLFE 60 FSSAGMKRTL ARYNKCFESS ETALEESRAE KEEPMEVDVL KDELEKLQKK QLRLLGNDLS 120 SLSLKELQKL ENELTEGLFS VKEKKDKLLM EQLEQSRVKV EELRRLFPQA DHAIPSYLEY 180 YPVEKQNSPV NHGAKSPDLV SNFAFDNGDS DTTLQLGLPS DTYRKRKAPE RESHSNDSGS 240 QLGHVMLTPI GHLNRLPSKN KKIRVREA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13790.1	1e-61	MIKC_MADS family protein