PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G22196
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 315aa    MW: 35572.6 Da    PI: 6.7259
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G22196genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.3e-12179204126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  y   +C+++ +tG+C yGd+CkF+H+
  Ro07_G22196 179 YQPDICKDYKETGYCGYGDSCKFMHD 204
                  67789********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MGDSGGNPEP GEVCNFFRKP STKRSFRKRT AEAEEDEESN SGSVLLPSQR KAAKPDGKLF  60
FSSGPSKISD DGKVILEFKS SKEIQVEHDS RATATLETET EFSRDARAVR ERVLKQSEEA  120
LNGTGKSTGN EKLYKGIHGY TDHKAGFRRE LTVASEKAGG SHGPLRASAH IRASTRFDYQ  180
PDICKDYKET GYCGYGDSCK FMHDRGDYKS GWQMEREWDE AEKVRKRNLA LREACEEVVD  240
DEEEEEDDDS LPFACFICRE PFVDPVVTKC NHYFCEHCAL KHHSKNKKCF VCNKPTLGIF  300
NTAHEIRKRM AAEGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-160C3H family protein